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Welcome To BioDAS.org

http://biodas.org/ will eventually be migrated to a wiki format. In the meantime, please continue to use the original site. If you want to pitch in and help this migration, send a note to the BioDAS discussion list.

About DAS

The Distributed Annotation System (DAS) defines a communication protocol used to exchange biological annotations. It is motivated by the idea that annotations should not be provided by single centralized databases, but instead be spread over multiple sites. Data distribution, performed by DAS servers, is separated from visualization, which is done by DAS clients.

DAS is a client-server system in which a single client integrates information from multiple servers. It allows a single machine to gather up genome annotation information from multiple distant web sites, collate the information, and display it to the user in a single view. Little coordination is needed among the various information providers.

DAS is heavily used in the genome bioinformatics community. Over the last years we have also seen growing acceptance in the protein sequence and structure communities.

What can I do with DAS ?

A number of webpages and applications is available that are using DAS.

• IGB: http://genoviz.sourceforge.net

• Gbrowse: http://www.gmod.org/gbrowse_installation

• Ensembl: http://www.ensembl.org/info/data/external_data/das/ensembl_das.html

• Spice: http://www.efamily.org.uk/software/dasclients/spice/

• Dasty: http://www.ebi.ac.uk/das-srv/uniprot/dasty/content?ID=:dis=BioSapiens

• Dasty2: http://www.ebi.ac.uk/~rafael/pre_dasty2/

• Jalview: http://www.jalview.org

• PeppeR: http://biocomp.cnb.uam.es/das/PeppeR/

The Protocol

Currently there are two versions of the DAS protocol

• DAS/1

• DAS/2

Getting started

Consult the User's Guide for information on using the wiki software.

• Configuration settings list
• MediaWiki FAQ
• MediaWiki release mailing list