DASworkshop200903

From BioDAS
Revision as of 11:26, 4 March 2009 by Andy.jenkinson (talk) (New page: =DAS workshop March 9th-11th 2009 Genome Campus, Hinxton= frame|BioSapiens Network ==Day 1== {| class="wikitable" border="1" |- style="background:silver" !...)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

DAS workshop March 9th-11th 2009 Genome Campus, Hinxton

BioSapiens Network

Day 1

Time ProjectName Speaker Presentation
09:30 - 10:00 Arrival - Tea, Coffee.
10:00 Opening talk Tim Hubbard presentation
10:20 CNIO Osvaldo Grana presentation
10:40 Jalview / VAMSAS Jim Procter / Geoff Barton presentation
11:00 Pfam Rob Finn
11:20 UniProt / MyDAS Phil Jones presentation
11:40 Dasty2 Rafael Jimenez presentation
12:00 short demo: Dastard Thomas Down
12:15-13:30 Lunch break
13:30 Ensembl James Smith / Eugene Kulesha
13:50 DAS registry, SPICE Andreas Prlic presentation
14:10 DAS - writeback Asja Grzibovska
14:30 Interaction DAS Hagen Blankenburg / Mario Albrecht presentation
14:50 PeppeR Jose Ramon Macias presentation
15:10-15:30 coffee break
15:30 Annotation Pipeline Niall Haslam presentation
15:50 Annotation type ontology Gabby Reeves presentation
16:10 Proserver Roger Pettett / Andy Jenkinson presentation
16:30 BioMart & DAS Syed Haider / Arek Kasprzyk presentation
17:00 Open discussion How to improve interopability, future extensions

Day 2

Time Title Speaker Resources
09:15 - 10:00 DAS - Technical Introduction Phil Jones Presentation:
Powerpoint
Open Document Format
PDF
10:00 - 10:35 DAS Introductory Tutorial - DAS servers and the DAS Registration Service Phil Jones Introductory Tutorial
10:35 - 11:15 DAS - Client Demonstration: Ensembl, grouping and histograms Eugene Kulesha
11:15 - 11:40 Coffee break
11:40 - 12:10 Dasty2 Rafael Jimenez
12:10 - 12:40 SPICE, Mapping features on 3D, viewing alignments Andreas Prlic SPICE links
12:40 - 13:40 Lunch break
13:40 - 14:10 Pepper Jose Ramon Macias http://biocomp.cnb.csic.es/das
14:10 - 15:10 DAS: Setting Up Your Own Server. In this section the group will split into two tracks - one for Perl programmers and one for Java programmers. Proserver: Andy Jenkinson

Dazzle: Andreas Prlic

ProServer: writing a SourceAdaptor

Dazzle: using existing plugins
Dazzle: writing a plugin
Chromosome 21 GFF File

15:10 - 15:30 Coffee break
15:30 - 16:30 DAS - Coding a Client. Bio::Das::Lite (Perl) - Andy Jenkinson

Dasobert (Java) - Andreas Prlic

Bio::Das::Lite tutorial