Difference between revisions of "DASworkshop200903"

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(Day 2)
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=DAS workshop March 9th-11th 2009 Genome Campus, Hinxton=
 
=DAS workshop March 9th-11th 2009 Genome Campus, Hinxton=
 
[[Image:Biosapiens_final.gif|frame|BioSapiens Network]]
 
[[Image:Biosapiens_final.gif|frame|BioSapiens Network]]
 +
 +
==Day 2==
 +
 +
 +
{| class="wikitable" border="1"
 +
|- style="background:silver"
 +
! width="100px"|Time
 +
! Title
 +
! Speaker
 +
! Resources
 +
|-
 +
| 8:45 - 9:30
 +
| colspan="3" | Minibus/Taxis to pick attendees up from hotels and bring to Campus
 +
|- style="background:#ffdead;"
 +
| 9:30 - 10:00
 +
| colspan="3" | Coffee is served outside the training room
 +
|- style="background:#ffdead;"
 +
|-
 +
| 10:00 - 10:10
 +
| Welcome and Introduction to the Workshop
 +
| Jonathan Warren
 +
|
 +
|-
 +
| 10:10 - 11:10
 +
| DAS - Technical Introduction
 +
| Andy Jenkinson
 +
| Presentation:<br/>[http://www.ebi.ac.uk/~aj/das_workshop_2009/DAS-technical-introduction.ppt Powerpoint]<br/>[http://www.ebi.ac.uk/~aj/das_workshop_2009/DAS-technical-introduction.pdf PDF]
 +
|-
 +
| 11:10 - 11:30
 +
| The DAS Registration Service
 +
| Jonathan Warren
 +
|
 +
|-
 +
| 11:30 - 12:15
 +
| Hands On Tutorial - Setting up a DAS Server and creating a DAS Client. The room will be split into two groups: one for Java and one for Perl.
 +
| Jonathan Warren and Andy Jenkinson
 +
| [http://www.ebi.ac.uk/~aj/das_workshop_2009/daslite_tutorial.html Bio::Das::ProServer server tutorial]<br/>
 +
[http://www.ebi.ac.uk/~aj/das_workshop_2009/daslite_tutorial.html Bio::Das::Lite client tutorial]<br/>
 +
|- style="background:#ffdead;"
 +
| 12:15 - 13:15
 +
| colspan="3" | Lunch break
 +
|-
 +
| 13:15 - 15:10
 +
| colspan="3" | Hands On Tutorial - continued
 +
|- style="background:#ffdead;"
 +
| 15:10 - 15:30
 +
| colspan="3"|Coffee break
 +
|-
 +
| 15:30 - 16:30
 +
| colspan="3" | Hands On Tutorial - continued
 +
|}
 +
 
==Day 1==
 
==Day 1==
  
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|
 
|
 
|-
 
|-
|}
 
 
==Day 2==
 
 
 
{| class="wikitable" border="1"
 
|- style="background:silver"
 
! width="100px"|Time
 
! Title
 
! Speaker
 
! Resources
 
|-
 
| 8:45 - 9:30
 
| colspan="3" | Minibus/Taxis to pick attendees up from hotels and bring to Campus
 
|- style="background:#ffdead;"
 
| 9:30 - 10:00
 
| colspan="3" | Coffee is served outside the training room
 
|- style="background:#ffdead;"
 
|-
 
| 10:00 - 10:10
 
| Welcome and Introduction to the Workshop
 
| Jonathan Warren
 
|
 
|-
 
| 10:10 - 11:10
 
| DAS - Technical Introduction
 
| Andy Jenkinson
 
| Presentation:<br/>[http://www.ebi.ac.uk/~aj/das_workshop_2009/DAS-technical-introduction.ppt Powerpoint]<br/>[http://www.ebi.ac.uk/~aj/das_workshop_2009/DAS-technical-introduction.pdf PDF]
 
|-
 
| 11:10 - 11:30
 
| The DAS Registration Service
 
| Jonathan Warren
 
|
 
|-
 
| 11:30 - 12:15
 
| Hands On Tutorial - Setting up a DAS Server and creating a DAS Client. The room will be split into two groups: one for Java and one for Perl.
 
| Jonathan Warren and Andy Jenkinson
 
| [http://www.ebi.ac.uk/~aj/das_workshop_2009/daslite_tutorial.html Bio::Das::ProServer server tutorial]<br/>
 
[http://www.ebi.ac.uk/~aj/das_workshop_2009/daslite_tutorial.html Bio::Das::Lite client tutorial]<br/>
 
|- style="background:#ffdead;"
 
| 12:15 - 13:15
 
| colspan="3" | Lunch break
 
|-
 
| 13:15 - 15:10
 
| colspan="3" | Hands On Tutorial - continued
 
|- style="background:#ffdead;"
 
| 15:10 - 15:30
 
| colspan="3"|Coffee break
 
|-
 
| 15:30 - 16:30
 
| colspan="3" | Hands On Tutorial - continued
 
 
|}
 
|}

Revision as of 12:16, 4 March 2009

DAS workshop March 9th-11th 2009 Genome Campus, Hinxton

BioSapiens Network

Day 2

Time Title Speaker Resources
8:45 - 9:30 Minibus/Taxis to pick attendees up from hotels and bring to Campus
9:30 - 10:00 Coffee is served outside the training room
10:00 - 10:10 Welcome and Introduction to the Workshop Jonathan Warren
10:10 - 11:10 DAS - Technical Introduction Andy Jenkinson Presentation:
Powerpoint
PDF
11:10 - 11:30 The DAS Registration Service Jonathan Warren
11:30 - 12:15 Hands On Tutorial - Setting up a DAS Server and creating a DAS Client. The room will be split into two groups: one for Java and one for Perl. Jonathan Warren and Andy Jenkinson Bio::Das::ProServer server tutorial

Bio::Das::Lite client tutorial

12:15 - 13:15 Lunch break
13:15 - 15:10 Hands On Tutorial - continued
15:10 - 15:30 Coffee break
15:30 - 16:30 Hands On Tutorial - continued

Day 1

Time ProjectName Speaker Presentation
09:30 - 10:00 Arrival - Tea, Coffee.
10:00 Opening talk Tim Hubbard
10:20 Collaborative Annotation tool (MaDAS) Victor de la Torre
10:40 Jalview / VAMSAS Jim Procter / Geoff Barton
11:00 Pfam Rob Finn
11:20 DASgenexp Bernat Gel
11:40 Dasty2 Rafael Jimenez
12:00 EMBOSS as an efficient DAS annotation source Peter Rice, Mahmut Uludag
12:15-13:30 Lunch break
13:30 Ensembl James Smith
13:50 Integration of info on gene expression and its temporal and spatial localization Jose Ramon Macias
14:10 DAS - writeback Gustavo Salazar
14:30 Interaction DAS Hagen Blankenburg
14:50 DAS for ENCODE data coordination Felix Kokocinski
15:10-15:30 coffee break
15:30 A web resource for selecting epitopes for antibodies Niall Haslam
15:50 DAS Searches Andreas Prlic
16:10 A karyotype DAS client Rafael Jimenez
16:30 DASher, a standalone Java client for DAS protein sequence features David Messina
16:50 Data Federation - BioMart & DAS Syed Haider
17:10 Trellis DAS2 framework- which includes the DAS1-->DAS2 proxy and alpha UCSC DAS2 server Gregg Helt
17:30 Discussion/talk about activity organisation of next day - preliminary groups and chairs of groups