Difference between revisions of "DASworkshop200903"
From BioDAS
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=DAS workshop March 9th-11th 2009 Genome Campus, Hinxton= | =DAS workshop March 9th-11th 2009 Genome Campus, Hinxton= | ||
[[Image:Biosapiens_final.gif|frame|BioSapiens Network]] | [[Image:Biosapiens_final.gif|frame|BioSapiens Network]] | ||
| + | |||
| + | ==Day 2== | ||
| + | |||
| + | |||
| + | {| class="wikitable" border="1" | ||
| + | |- style="background:silver" | ||
| + | ! width="100px"|Time | ||
| + | ! Title | ||
| + | ! Speaker | ||
| + | ! Resources | ||
| + | |- | ||
| + | | 8:45 - 9:30 | ||
| + | | colspan="3" | Minibus/Taxis to pick attendees up from hotels and bring to Campus | ||
| + | |- style="background:#ffdead;" | ||
| + | | 9:30 - 10:00 | ||
| + | | colspan="3" | Coffee is served outside the training room | ||
| + | |- style="background:#ffdead;" | ||
| + | |- | ||
| + | | 10:00 - 10:10 | ||
| + | | Welcome and Introduction to the Workshop | ||
| + | | Jonathan Warren | ||
| + | | | ||
| + | |- | ||
| + | | 10:10 - 11:10 | ||
| + | | DAS - Technical Introduction | ||
| + | | Andy Jenkinson | ||
| + | | Presentation:<br/>[http://www.ebi.ac.uk/~aj/das_workshop_2009/DAS-technical-introduction.ppt Powerpoint]<br/>[http://www.ebi.ac.uk/~aj/das_workshop_2009/DAS-technical-introduction.pdf PDF] | ||
| + | |- | ||
| + | | 11:10 - 11:30 | ||
| + | | The DAS Registration Service | ||
| + | | Jonathan Warren | ||
| + | | | ||
| + | |- | ||
| + | | 11:30 - 12:15 | ||
| + | | Hands On Tutorial - Setting up a DAS Server and creating a DAS Client. The room will be split into two groups: one for Java and one for Perl. | ||
| + | | Jonathan Warren and Andy Jenkinson | ||
| + | | [http://www.ebi.ac.uk/~aj/das_workshop_2009/daslite_tutorial.html Bio::Das::ProServer server tutorial]<br/> | ||
| + | [http://www.ebi.ac.uk/~aj/das_workshop_2009/daslite_tutorial.html Bio::Das::Lite client tutorial]<br/> | ||
| + | |- style="background:#ffdead;" | ||
| + | | 12:15 - 13:15 | ||
| + | | colspan="3" | Lunch break | ||
| + | |- | ||
| + | | 13:15 - 15:10 | ||
| + | | colspan="3" | Hands On Tutorial - continued | ||
| + | |- style="background:#ffdead;" | ||
| + | | 15:10 - 15:30 | ||
| + | | colspan="3"|Coffee break | ||
| + | |- | ||
| + | | 15:30 - 16:30 | ||
| + | | colspan="3" | Hands On Tutorial - continued | ||
| + | |} | ||
| + | |||
==Day 1== | ==Day 1== | ||
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Revision as of 08:16, 4 March 2009
DAS workshop March 9th-11th 2009 Genome Campus, Hinxton
BioSapiens Network
Day 2
| Time | Title | Speaker | Resources |
|---|---|---|---|
| 8:45 - 9:30 | Minibus/Taxis to pick attendees up from hotels and bring to Campus | ||
| 9:30 - 10:00 | Coffee is served outside the training room | ||
| 10:00 - 10:10 | Welcome and Introduction to the Workshop | Jonathan Warren | |
| 10:10 - 11:10 | DAS - Technical Introduction | Andy Jenkinson | Presentation: Powerpoint |
| 11:10 - 11:30 | The DAS Registration Service | Jonathan Warren | |
| 11:30 - 12:15 | Hands On Tutorial - Setting up a DAS Server and creating a DAS Client. The room will be split into two groups: one for Java and one for Perl. | Jonathan Warren and Andy Jenkinson | Bio::Das::ProServer server tutorial |
| 12:15 - 13:15 | Lunch break | ||
| 13:15 - 15:10 | Hands On Tutorial - continued | ||
| 15:10 - 15:30 | Coffee break | ||
| 15:30 - 16:30 | Hands On Tutorial - continued | ||
Day 1
| Time | ProjectName | Speaker | Presentation |
|---|---|---|---|
| 09:30 - 10:00 | Arrival - Tea, Coffee. | ||
| 10:00 | Opening talk | Tim Hubbard | |
| 10:20 | Collaborative Annotation tool (MaDAS) | Victor de la Torre | |
| 10:40 | Jalview / VAMSAS | Jim Procter / Geoff Barton | |
| 11:00 | Pfam | Rob Finn | |
| 11:20 | DASgenexp | Bernat Gel | |
| 11:40 | Dasty2 | Rafael Jimenez | |
| 12:00 | EMBOSS as an efficient DAS annotation source | Peter Rice, Mahmut Uludag | |
| 12:15-13:30 | Lunch break | ||
| 13:30 | Ensembl | James Smith | |
| 13:50 | Integration of info on gene expression and its temporal and spatial localization | Jose Ramon Macias | |
| 14:10 | DAS - writeback | Gustavo Salazar | |
| 14:30 | Interaction DAS | Hagen Blankenburg | |
| 14:50 | DAS for ENCODE data coordination | Felix Kokocinski | |
| 15:10-15:30 | coffee break | ||
| 15:30 | A web resource for selecting epitopes for antibodies | Niall Haslam | |
| 15:50 | DAS Searches | Andreas Prlic | |
| 16:10 | A karyotype DAS client | Rafael Jimenez | |
| 16:30 | DASher, a standalone Java client for DAS protein sequence features | David Messina | |
| 16:50 | Data Federation - BioMart & DAS | Syed Haider | |
| 17:10 | Trellis DAS2 framework- which includes the DAS1-->DAS2 proxy and alpha UCSC DAS2 server | Gregg Helt | |
| 17:30 | Discussion/talk about activity organisation of next day - preliminary groups and chairs of groups |
