Difference between revisions of "DASWorkshop2012"

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(→‎Example DAS commands can be found here as a DAS quick reference guide: DAS examples)
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! Resources
 
! Resources
 
|-  style="background:#ffdead;"
 
|-  style="background:#ffdead;"
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| 8:45 - 9:30
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| 8:45
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| colspan="3" | Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus.
 
−
|- style="background:#ffdead;"
 
−
| 9:30 - 09:50
 
−
| colspan="3" | Coffee is served outside the training room
 
−
|-
 
−
| 09:50 - 10:00
 
 
| Welcome and Introduction to the Workshop
 
| Welcome and Introduction to the Workshop
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| Jonathan Warren
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|  
 
|
 
|
 
|-
 
|-
 
| 10:00 - 10:20
 
| 10:00 - 10:20
 
| DAS - Introduction/Overview
 
| DAS - Introduction/Overview
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| Andy Jenkinson
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|  
 
| [http://www.biotnet.org/training-materials/introduction-das Introduction] [http://www.biotnet.org/training-materials/technical-introduction-das Technical Introduction]
 
| [http://www.biotnet.org/training-materials/introduction-das Introduction] [http://www.biotnet.org/training-materials/technical-introduction-das Technical Introduction]
 
|-
 
|-
 
| 10:20 - 10:35
 
| 10:20 - 10:35
 
| The DAS Game
 
| The DAS Game
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| Rafael Jimenez
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|
 
| [http://www.biotnet.org/training-materials/das-game The DAS Game]
 
| [http://www.biotnet.org/training-materials/das-game The DAS Game]
 
|-
 
|-
 
| 10:35 - 11:25
 
| 10:35 - 11:25
 
| Hands-on tutorial: using DAS software, 10 minute introduction of some DAS implementations (Bernat)
 
| Hands-on tutorial: using DAS software, 10 minute introduction of some DAS implementations (Bernat)
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| Bernat Gel, Thomas Down, Jose Villavaces
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|  
 
| Implementations. [http://www.lsi.upc.edu/~bgel/research/easydas/tutorial/Implementations.ppt PPT] [http://code.google.com/p/easydas/wiki/tutorialDASWorkshop2011 Creating DAS sources from GFF files supplied using easyDAS] (Bernat), Viewing DAS sources using Dalliance (Thomas) [http://www.biodalliance.org/people/thomas/dalliance-for-das-workshop.pdf PDF]-or- Dasty3 (Jose) [http://www.ebi.ac.uk/~ljgarcia/Presentations/Tutorials/DASTY3_DASWorkshop_2011.pdf PDF]
 
| Implementations. [http://www.lsi.upc.edu/~bgel/research/easydas/tutorial/Implementations.ppt PPT] [http://code.google.com/p/easydas/wiki/tutorialDASWorkshop2011 Creating DAS sources from GFF files supplied using easyDAS] (Bernat), Viewing DAS sources using Dalliance (Thomas) [http://www.biodalliance.org/people/thomas/dalliance-for-das-workshop.pdf PDF]-or- Dasty3 (Jose) [http://www.ebi.ac.uk/~ljgarcia/Presentations/Tutorials/DASTY3_DASWorkshop_2011.pdf PDF]
 
|-
 
|-
 
| 11:25 - 12:15
 
| 11:25 - 12:15
 
| Hands-on programming tutorial: Creating a custom DAS source
 
| Hands-on programming tutorial: Creating a custom DAS source
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| Gustavo, Andy
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|  
 
| [http://www.biotnet.org/training-materials/das-servers 10 minute introduction to DAS servers], [http://code.google.com/p/mydas/wiki/Tutorials MyDAS] -or- [http://www.biotnet.org/training-materials/bio-das-proserver-tutorial ProServer]
 
| [http://www.biotnet.org/training-materials/das-servers 10 minute introduction to DAS servers], [http://code.google.com/p/mydas/wiki/Tutorials MyDAS] -or- [http://www.biotnet.org/training-materials/bio-das-proserver-tutorial ProServer]
 
|- style="background:#ffdead;"
 
|- style="background:#ffdead;"
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| 13:15 - 14:50
 
| 13:15 - 14:50
 
| Tutorial - DAS servers continued
 
| Tutorial - DAS servers continued
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| Andy Jenkinson and Gustavo Salazar
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|  
 
| Perl(ProServer) and Java(MyDAS)  
 
| Perl(ProServer) and Java(MyDAS)  
 
|-
 
|-
 
|14:50 - 15:10
 
|14:50 - 15:10
 
| Hands on Tutorial The DAS registry: Short introduction talk then hands on tutorial
 
| Hands on Tutorial The DAS registry: Short introduction talk then hands on tutorial
−
| Jonathan Warren
+
|
 
| [http://www.biotnet.org/training-materials/short-das-registry-tutorial-basic-knowledge DAS Registry Tutorial]  
 
| [http://www.biotnet.org/training-materials/short-das-registry-tutorial-basic-knowledge DAS Registry Tutorial]  
 
|-style="background:#ffdead;"
 
|-style="background:#ffdead;"
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| 15:30 - 17:15  
 
| 15:30 - 17:15  
 
| Hands-on programming tutorial: DAS client libraries, 10 minute introduction
 
| Hands-on programming tutorial: DAS client libraries, 10 minute introduction
−
| Andy, Rafael, Leyla, Jose, Bernat
+
|  
 
| [http://www.biotnet.org/training-materials/bio-das-lite-tutorial Bio::Das::Lite]-or- [http://www.biotnet.org/training-materials/jdas JDAS] -or- [http://code.google.com/p/jsdas/wiki/tutorial JSDAS]. Each will cover sources, sequence & features using the same examples
 
| [http://www.biotnet.org/training-materials/bio-das-lite-tutorial Bio::Das::Lite]-or- [http://www.biotnet.org/training-materials/jdas JDAS] -or- [http://code.google.com/p/jsdas/wiki/tutorial JSDAS]. Each will cover sources, sequence & features using the same examples
 
|-   
 
|-   
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|- style="background:#ffdead;"
 
|- style="background:#ffdead;"
 
|19:00
 
|19:00
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|Dinner at [http://www.browns-restaurants.co.uk/menu-cambridge.php Browns] [http://maps.google.co.uk/maps?f=d&source=s_d&saddr=Travelodge,+Clifton+Way,+Cambridge&daddr=23+Trumpington+St,+Cambridge+CB2+1+(Browns+Restaurant)&hl=en&geocode=FdNbHAMdAhcCACErVS-6-2CqXg%3BFZ9_HAMdXNoBACE-peCSwSHlsA&mra=ls&dirflg=w&sll=52.194166,0.129647&sspn=0.012233,0.035534&ie=UTF8&ll=52.194166,0.129647&spn=0.012233,0.035534&z=15 directions from Travel lodge] The Private Dining Room 7.00 pm for 7.30 pm sit down. There is a large bus for this journey at 17.30 and so we encourage campus people who would normally use the campus bus to take the workshop bus. Browns is approx 25 minute walk from the travel lodge we are currently suggesting a pub stop at The Snug on the way. People will be responsible for getting back to their hotel or home after the restaurant.
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|Dinner at the red lion Whittlesford 7.00 pm for 7.30 pm sit down.
 
|
 
|
 
|
 
|

Revision as of 11:55, 11 January 2012

The 2012 DAS Workshop will be held on 27-29 Feb at the EBI Hinxton campus.


DAS Workshop 2012 Schedule

All 3 days will be held in the EBI training room.

Day 1

Some knowledge/experience of PERL or Java and or Javascript would be beneficial for the hands on training day.

Example DAS commands can be found here as a DAS quick reference guide: DAS examples

Time Title Speaker Resources
8:45 Welcome and Introduction to the Workshop
10:00 - 10:20 DAS - Introduction/Overview Introduction Technical Introduction
10:20 - 10:35 The DAS Game The DAS Game
10:35 - 11:25 Hands-on tutorial: using DAS software, 10 minute introduction of some DAS implementations (Bernat) Implementations. PPT Creating DAS sources from GFF files supplied using easyDAS (Bernat), Viewing DAS sources using Dalliance (Thomas) PDF-or- Dasty3 (Jose) PDF
11:25 - 12:15 Hands-on programming tutorial: Creating a custom DAS source 10 minute introduction to DAS servers, MyDAS -or- ProServer
12:15 - 13:15 Lunch break
13:15 - 14:50 Tutorial - DAS servers continued Perl(ProServer) and Java(MyDAS)
14:50 - 15:10 Hands on Tutorial The DAS registry: Short introduction talk then hands on tutorial DAS Registry Tutorial
15:10 - 15:30 Cofee Break
15:30 - 17:15 Hands-on programming tutorial: DAS client libraries, 10 minute introduction Bio::Das::Lite-or- JDAS -or- JSDAS. Each will cover sources, sequence & features using the same examples
17:30 Departure from Campus to Cambridge Travel Lodge and Leisure Park at circa 17:30 hrs.
19:00 Dinner at the red lion Whittlesford 7.00 pm for 7.30 pm sit down.

Day 2

Day 3


Location is the EBI Training Room 

As per other days -Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus.

Start at 10am 

Departure 16:00 hrs form campus to Travelodge in order for people to get planes and trains etc back home.

Finish at 4pm.


Recent developments since the last workshop

DAS writeback, DAS search, Registry CRUD via web service (get, post, put, delete), Registry supports JSON for all requests and responses,

Suggestions for discussions on Developers Day

  • JSON roll out to other servers and clients? (jw)
  • Firming up of the authentication DAS standard so the registry and writeback are consistent (jw)
  • Add support for conditional get (If-Modified-Since - reply only if modified since the modified since header) ? (jw)

Possible DAS related Talks

DAS Registry - new architecture and capabilities (jw)

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