Difference between revisions of "DASWorkshop2011"

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(Discussion about fitting alternative data formats into the DAS ecosystem (TAD))
(Genome alignments in DAS (TAD))
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==Security - authorization and authentication for clients, servers, registry (GS, AJ, JW)==
 
==Security - authorization and authentication for clients, servers, registry (GS, AJ, JW)==
 
==Genome alignments in DAS (TAD)==
 
==Genome alignments in DAS (TAD)==
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[[DAS1.6E#Alignment|Some background]].
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==Improving interactivity of DAS data (TAD)==
 
==Improving interactivity of DAS data (TAD)==
  

Revision as of 16:31, 4 February 2011

The 2011 DAS Workshop will be held on 2-4 Marchl at the EBI Hinxton campus.


DAS Workshop 2011 Schedule

The first 2 days will be held in the EBI training room. 3rd day room to be announced.

Day 1

Time Title Speaker Resources
8:45 - 9:30 Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus.
9:30 - 10:00 Coffee is served outside the training room
10:00 - 10:10 Welcome and Introduction to the Workshop Jonathan Warren
10:10 - 10:30 DAS - Introduction/Overview Andy Jenkinson
10:30 - 10:40 The DAS Game Rafael Jimenez
10:40 - 11:40 Hands on DAS Server Tutorials - Setting up a quick source for sharing data with your colleagues. Andy Jenkinson and Gustavo Salazar Perl(ProServer) and Java(MyDAS)
11:40 - 12:15 Registering your source Jonathan Warren The DAS Registry
12:15 - 13:15 Lunch break
13:15 - 14:15 Tutorial - DAS servers continued Andy Jenkinson and Gustavo Salazar Perl(ProServer) and Java(MyDAS)
14:15 - 14:35 Automated creation of DAS servers Bernat Gel easyDAS
14:35 - 14:50 DAS clients - Putting it all together Leyla J. Garcia
14:50 - 15:25 Talk and Tutorial -DAS client libraries to query DAS sources Andy Jenkinson, Jose Villaveces and Rafael Jimenez Perl(Bio::Das::Lite), Javascript(jsDAS) and Java(JAXB)
15:25 - 15:45 Cofee Break
15:45 - 17:15 Hands On Tutorial - continued
17:30 Departure from Campus to Cambridge Leisure Park at circa 17:30 hrs.
19:00 Dinner at Browns The Private Dining Room 7.00 pm for 7.30 pm sit down.

Day 2

Preliminary schedule where the order and content may still change considerably.

Time ProjectName Speaker Presentation
8:45 - 9:30 Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus.
09:30 - 10:00 Arrival - Tea, Coffee.
10:00 Opening talk Tim Hubbard []
10:20 Dalliance- a new interactive DAS client Thomas Down []
[]
11:00 DAS search Gustavo Salazar []
11:20 easyDAS: a hosted solution for DAS server creation Bernat Gel PPT
11:40 Update on the DAS Registry Jonathan Warren PPT
12:00 Gregg Helt WebApollo: Extending JBrowse to support DAS and genome annotation editing []
12:15-13:30 Lunch break
13:30 EBI Search Andy Jenkinson []
13:50 Dealing with Personal Genomes using DAS Manuel Corpas []
14:10 Dasty update Jose Villaveces (and Leyla Garcia) PPT
14:30 EMBOSS as a DAS client Peter Rice, Mahmut Uludag []
14:50 [], []
15:10-15:30 coffee break
15:30
15:50 []
16:10 []
16:30 Discussion/talk about activity organisation of next day - preliminary groups and chairs of groups
16:50
17:10 Bus Leaves for Cambridge Travel Lodge

Day 3

As per other days -Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus.

Start at 10am

Departure 16:00 hrs form campus to Travellodge in order for people to get planes and trains etc back home.

Finish at 4pm.

Suggested Topics:

Discussion about fitting alternative data formats into the DAS ecosystem (TAD)

See proposal from 2010 workshop.

Security - authorization and authentication for clients, servers, registry (GS, AJ, JW)

Genome alignments in DAS (TAD)

Some background.

Improving interactivity of DAS data (TAD)

Can we extend DAS to give better support for more interactive client navigation? Things like next/previous feature buttons.

Customized html labels/pop ups? (JW)

Dasobert 2

Improvements, Schema Driven? (JW, RJ))