Difference between revisions of "DASWorkshop2011"

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(→‎Improving interactivity of DAS data (TAD))
(→‎Day 1)
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| DAS - Introduction/Overview
 
| DAS - Introduction/Overview
 
| Andy Jenkinson
 
| Andy Jenkinson
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| [http://www.ebi.ac.uk/~aj/das_workshop_2010/DAS-Introduction.pptx Basic Introduction] [http://www.ebi.ac.uk/~aj/das_workshop_2010/DAS-Introduction-Technical.pptx Technical Introduction]
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|  
 
|-
 
|-
 
| 10:30 - 10:40
 
| 10:30 - 10:40
 
| The DAS Game
 
| The DAS Game
 
| Rafael Jimenez
 
| Rafael Jimenez
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| [http://www.ebi.ac.uk/~rafael/talks/2010-04-07_workshop_das/dasGame/ Game cards]
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|  
 
|-
 
|-
 
| 10:40 - 11:40
 
| 10:40 - 11:40
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| Hands on DAS Server Tutorials - Setting up a quick source for sharing data with your colleagues using Proserver or MyDAS - The room will be split into two groups: one for Java and one for Perl.
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| Hands on DAS Server Tutorials - Setting up a quick source for sharing data with your colleagues.
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| Andy Jenkinson, Gustavo Salazar
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| Andy Jenkinson and Gustavo Salazar
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| Introduction talk: [http://oware.cbio.uct.ac.za/~gustavo/DASservers.ppt PPT] Java:[http://code.google.com/p/mydas/wiki/MyDASTutorial MyDAS Part 1] Perl:[http://www.ebi.ac.uk/~aj/das_workshop_2010/proserver_tutorial_1.html ProServer Part 1]
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| Perl(ProServer) and Java(MyDAS)
 
|-
 
|-
 
| 11:40 - 12:15
 
| 11:40 - 12:15
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| The DAS Registry and registering your source
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| Registering your source
 
| Jonathan Warren
 
| Jonathan Warren
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|[http://www.biodas.org/wiki/RegistryTutorial2010 RegistryTutorial2010]
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| The DAS Registry
 
|- style="background:#ffdead;"
 
|- style="background:#ffdead;"
 
| 12:15 - 13:15  
 
| 12:15 - 13:15  
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| 13:15 - 14:15
 
| 13:15 - 14:15
 
| Tutorial - DAS servers continued
 
| Tutorial - DAS servers continued
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| Andy Jenkinson, Rafael Jimenez, Gustavo Salazar
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| Andy Jenkinson and Gustavo Salazar
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| Java: [http://code.google.com/p/mydas/wiki/MyDASTutorial2ndPart MyDAS Part 2][http://code.google.com/p/mydas/wiki/MyDASTutorial3rdPart MyDAS Part 3]Perl:[http://www.ebi.ac.uk/~aj/das_workshop_2010/proserver_tutorial_2.html ProServer Part 2][http://www.ebi.ac.uk/~aj/das_workshop_2010/proserver_tutorial_3.html ProServer Part 3]
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| Perl(ProServer) and Java(MyDAS)
 
|-
 
|-
 
|14:15 - 14:35
 
|14:15 - 14:35
 +
| Automated creation of DAS servers
 +
| Bernat Gel
 +
| easyDAS
 +
|-
 +
|14:35 - 14:50
 
|DAS clients - Putting it all together
 
|DAS clients - Putting it all together
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|Rob Finn
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|Leyla J. Garcia
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| [http://www.biodas.org/workshop_2009/20090309ClientSpecReview.ppt 2009 Powerpoint]<br/>[http://www.biodas.org/workshop_2009/20090309ClientSpecReview.pdf 2009 PDF]
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|  
 
|-
 
|-
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|14:35 - 15:10
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|14:50 - 15:25
 
|Talk and Tutorial -DAS client libraries to query DAS sources
 
|Talk and Tutorial -DAS client libraries to query DAS sources
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|Andy Jenkinson, Rafael Jimenez, Jose Villaveces
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|Andy Jenkinson, Jose Villaveces and Rafael Jimenez
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|Javascript:[http://www.ebi.ac.uk/~jvillave/wiki/doku.php?id=jsdas JSDAS Tutorial], Java:[http://www.ebi.ac.uk/~rafael/dokuwiki/doku.php?id=das:courses:dasobert Dasobert Tutorial], Perl:[http://www.ebi.ac.uk/~aj/das_workshop_2010/daslite_tutorial.html Bio::Das::Lite]
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|Perl(Bio::Das::Lite), Javascript(jsDAS) and Java(JAXB)
 
|-style="background:#ffdead;"
 
|-style="background:#ffdead;"
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| 15:10 - 15:30
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| 15:25 - 15:45
 
| colspan="3" | Cofee Break
 
| colspan="3" | Cofee Break
 
|-
 
|-
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| 15:30 - 17:00
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| 15:45 - 17:15
 
| colspan="3" | Hands On Tutorial - continued
 
| colspan="3" | Hands On Tutorial - continued
 
|-  style="background:#ffdead;"
 
|-  style="background:#ffdead;"
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|17:15
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|17:30
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| colspan="3" |Departure from Campus to Cambridge Leisure Park at circa 17:15 hrs.
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| colspan="3" |Departure from Campus to Cambridge Leisure Park at circa 17:30 hrs.
 
|- style="background:#ffdead;"
 
|- style="background:#ffdead;"
 
|19:00
 
|19:00

Revision as of 13:03, 1 February 2011

The 2011 DAS Workshop will be held on 2-4 Marchl at the EBI Hinxton campus.


DAS Workshop 2011 Schedule

The first 2 days will be held in the EBI training room. 3rd day room to be announced.

Day 1

Time Title Speaker Resources
8:45 - 9:30 Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus.
9:30 - 10:00 Coffee is served outside the training room
10:00 - 10:10 Welcome and Introduction to the Workshop Jonathan Warren
10:10 - 10:30 DAS - Introduction/Overview Andy Jenkinson
10:30 - 10:40 The DAS Game Rafael Jimenez
10:40 - 11:40 Hands on DAS Server Tutorials - Setting up a quick source for sharing data with your colleagues. Andy Jenkinson and Gustavo Salazar Perl(ProServer) and Java(MyDAS)
11:40 - 12:15 Registering your source Jonathan Warren The DAS Registry
12:15 - 13:15 Lunch break
13:15 - 14:15 Tutorial - DAS servers continued Andy Jenkinson and Gustavo Salazar Perl(ProServer) and Java(MyDAS)
14:15 - 14:35 Automated creation of DAS servers Bernat Gel easyDAS
14:35 - 14:50 DAS clients - Putting it all together Leyla J. Garcia
14:50 - 15:25 Talk and Tutorial -DAS client libraries to query DAS sources Andy Jenkinson, Jose Villaveces and Rafael Jimenez Perl(Bio::Das::Lite), Javascript(jsDAS) and Java(JAXB)
15:25 - 15:45 Cofee Break
15:45 - 17:15 Hands On Tutorial - continued
17:30 Departure from Campus to Cambridge Leisure Park at circa 17:30 hrs.
19:00 Dinner at Browns The Private Dining Room 7.00 pm for 7.30 pm sit down.

Day 2

Preliminary schedule where the order and content may still change considerably.

Time ProjectName Speaker Presentation
8:45 - 9:30 Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus.
09:30 - 10:00 Arrival - Tea, Coffee.
10:00 Opening talk Tim Hubbard []
10:20 Dalliance- a new interactive DAS client Thomas Down []
[]
11:00 DAS search Gustavo Salazar []
11:20 easyDAS: a hosted solution for DAS server creation Bernat Gel PPT
11:40 Update on the DAS Registry Jonathan Warren PPT
12:00 Gregg Helt WebApollo: Extending JBrowse to support DAS and genome annotation editing []
12:15-13:30 Lunch break
13:30 EBI Search Andy Jenkinson []
13:50 Dealing with Personal Genomes using DAS Manuel Corpas []
14:10 Dasty update Jose Villaveces (and Leyla Garcia) PPT
14:30 []
14:50 [], []
15:10-15:30 coffee break
15:30
15:50 []
16:10 []
16:30 Discussion/talk about activity organisation of next day - preliminary groups and chairs of groups
16:50
17:10 Bus Leaves for Cambridge Travel Lodge

Day 3

As per other days -Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus.

Start at 10am 

Departure 16:00 hrs form campus to Travellodge in order for people to get planes and trains etc back home.

Finish at 4pm.

Suggested Topics:

Discussion about fitting alternative data formats into the DAS ecosystem (TAD)

Security - authorization and authentication for clients, servers, registry (GS, AJ, JW)

Genome alignments in DAS (TAD)

Improving interactivity of DAS data (TAD)

Can we extend DAS to give better support for more interactive client navigation? Things like next/previous feature buttons.

Customized html labels/pop ups? (JW)

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