Difference between revisions of "DASWorkshop2010"
From BioDAS
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| DAS - Introduction/Overview | | DAS - Introduction/Overview | ||
| Andy Jenkinson | | Andy Jenkinson | ||
| − | | | + | | [http://www.ebi.ac.uk/~aj/das_workshop_2010/DAS-Introduction.pptx Basic Introduction] [http://www.ebi.ac.uk/~aj/das_workshop_2010/DAS-Introduction-Technical.pptx Technical Introduction] |
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| 10:30 - 10:40 | | 10:30 - 10:40 | ||
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| Hands on DAS Server Tutorials - Setting up a quick source for sharing data with your colleagues using Proserver or MyDAS - The room will be split into two groups: one for Java and one for Perl. | | Hands on DAS Server Tutorials - Setting up a quick source for sharing data with your colleagues using Proserver or MyDAS - The room will be split into two groups: one for Java and one for Perl. | ||
| Andy Jenkinson, Gustavo Salazar | | Andy Jenkinson, Gustavo Salazar | ||
| − | | Introduction talk: [http://oware.cbio.uct.ac.za/~gustavo/DASservers.ppt PPT] Java:[http://code.google.com/p/mydas/wiki/MyDASTutorial MyDAS Part 1] | + | | Introduction talk: [http://oware.cbio.uct.ac.za/~gustavo/DASservers.ppt PPT] Java:[http://code.google.com/p/mydas/wiki/MyDASTutorial MyDAS Part 1] Perl:[http://www.ebi.ac.uk/~aj/das_workshop_2010/proserver_tutorial_1.html ProServer Part 1] |
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| 11:40 - 12:15 | | 11:40 - 12:15 | ||
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| 13:15 - 14:15 | | 13:15 - 14:15 | ||
| − | | Tutorial - | + | | Tutorial - DAS servers continued |
| Andy Jenkinson, Rafael Jimenez, Gustavo Salazar | | Andy Jenkinson, Rafael Jimenez, Gustavo Salazar | ||
| − | | Java: [http://code.google.com/p/mydas/wiki/MyDASTutorial2ndPart MyDAS Part 2][http://code.google.com/p/mydas/wiki/MyDASTutorial3rdPart MyDAS Part 3] | + | | Java: [http://code.google.com/p/mydas/wiki/MyDASTutorial2ndPart MyDAS Part 2][http://code.google.com/p/mydas/wiki/MyDASTutorial3rdPart MyDAS Part 3]Perl:[http://www.ebi.ac.uk/~aj/das_workshop_2010/proserver_tutorial_2.html ProServer Part 2][http://www.ebi.ac.uk/~aj/das_workshop_2010/proserver_tutorial_3.html ProServer Part 3] |
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|14:15 - 14:35 | |14:15 - 14:35 | ||
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|Talk and Tutorial -DAS client libraries to query DAS sources | |Talk and Tutorial -DAS client libraries to query DAS sources | ||
|Andy Jenkinson, Rafael Jimenez, Jose Villaveces | |Andy Jenkinson, Rafael Jimenez, Jose Villaveces | ||
| − | |[http://www.ebi.ac.uk/~jvillave/wiki/doku.php?id=jsdas JSDAS Tutorial], [http://www.ebi.ac.uk/~rafael/dokuwiki/doku.php?id=das:courses:dasobert Dasobert Tutorial] | + | |Javascript:[http://www.ebi.ac.uk/~jvillave/wiki/doku.php?id=jsdas JSDAS Tutorial], Java:[http://www.ebi.ac.uk/~rafael/dokuwiki/doku.php?id=das:courses:dasobert Dasobert Tutorial], Perl:[http://www.ebi.ac.uk/~aj/das_workshop_2010/daslite_tutorial.html Bio::Das::Lite] |
|-style="background:#ffdead;" | |-style="background:#ffdead;" | ||
| 15:10 - 15:30 | | 15:10 - 15:30 | ||
Revision as of 19:50, 6 April 2010
The 2010 DAS Workshop will be held on 7-9 April at the EBI Hinxton campus.
- Information & registration: http://www.ebi.ac.uk/training/onsite/DAS_070410.html
DAS Workshop 2010 Schedule
All 3 days will be held in the EBI training room.
Day 1
| Time | Title | Speaker | Resources |
|---|---|---|---|
| 8:45 - 9:30 | Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus. | ||
| 9:30 - 10:00 | Coffee is served outside the training room | ||
| 10:00 - 10:10 | Welcome and Introduction to the Workshop | Jonathan Warren | |
| 10:10 - 10:30 | DAS - Introduction/Overview | Andy Jenkinson | Basic Introduction Technical Introduction |
| 10:30 - 10:40 | The DAS Game | Rafael Jimenez | |
| 10:40 - 11:40 | Hands on DAS Server Tutorials - Setting up a quick source for sharing data with your colleagues using Proserver or MyDAS - The room will be split into two groups: one for Java and one for Perl. | Andy Jenkinson, Gustavo Salazar | Introduction talk: PPT Java:MyDAS Part 1 Perl:ProServer Part 1 |
| 11:40 - 12:15 | The DAS Registry and registering your source | Jonathan Warren | RegistryTutorial2010 |
| 12:15 - 13:15 | Lunch break | ||
| 13:15 - 14:15 | Tutorial - DAS servers continued | Andy Jenkinson, Rafael Jimenez, Gustavo Salazar | Java: MyDAS Part 2MyDAS Part 3Perl:ProServer Part 2ProServer Part 3 |
| 14:15 - 14:35 | DAS clients - Putting it all together | Rob Finn | |
| 14:35 - 15:10 | Talk and Tutorial -DAS client libraries to query DAS sources | Andy Jenkinson, Rafael Jimenez, Jose Villaveces | Javascript:JSDAS Tutorial, Java:Dasobert Tutorial, Perl:Bio::Das::Lite |
| 15:10 - 15:30 | Cofee Break | ||
| 15:30 - 17:00 | Hands On Tutorial - continued | ||
| 17:15 | Departure from Campus to Cambridge Leisure Park at circa 17:15 hrs. | ||
Day 2
| Time | ProjectName | Speaker | Presentation |
|---|---|---|---|
| 8:45 - 9:30 | Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus. | ||
| 09:30 - 10:00 | Arrival - Tea, Coffee. | ||
| 10:00 | Opening talk | Tim Hubbard | [] |
| 10:20 | Collaborative genomics with DAS- a new interactive DAS client | Thomas Down | [] |
| 10:40 | Progress to report on linking EMBOSS and DAS | Peter Rice | [] |
| 11:00 | Visualization of sequence features with STRAP | Christoph Gille | [] |
| 11:20 | easyDAS: a hosted solution for DAS server creation | Bernat Gel | [] |
| 11:40 | Update on the DAS Registry | Jonathan Warren | [] |
| 12:00 | DAS service to provide information on 3D motifs- PDBe | Adel Golovin | [] |
| 12:15-13:30 | Lunch break | ||
| 13:30 | DAS Writeback and its integration in Dasty2 as a proof of concept | Gustavo Salazar | [] |
| 13:50 | KaryoDAS: An Interactive Genome Visualization Tool Using DECIPHER Data | Eugene Bragin/Manuel Corpas | [] |
| 14:10 | jsDAS: A javascript DAS client library | Jose Villaveces/ Bernat Gel | [] |
| 14:30 | Interaction DAS | Hagen Blankenburg | [] |
| 14:50 | Data integration in ENFIN using standards; the EnCore DAS service | Rafael Jimenez | [] |
| 15:10-15:30 | coffee break | ||
| 15:30 | Text Mining DAS source | Maximilian Haussler | [] |
| 15:50 | Update on the collaborative, web-based version of Apollo | Gregg Helt | [] |
| 16:10 | From Pfam Das Alignments to Widgets | Prasad Gunasekaran | [] |
| 16:30 | Discussion/talk about activity organisation of next day - preliminary groups and chairs of groups | [] | |
| 16:50 | |||
| 17:10 | Bus Leaves for Cambridge Travel Lodge | [] | |
| 19:00 | Dinner at Alimentum The Private Dining Room 7.00 pm for 7.30 pm sit down. | ||
Day 3
As per other days -Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus.
Start at 10am
Departure 16:00 hrs form campus to Travellodge in order for people to get planes and trains etc back home.
Finish at 4pm.
Suggested Topics:
Content negotiation and efficient data formats
how / if the big amounts data can be served via das
DAS for high-density quantitative data.
1: From molecules to sets. 2: Other dimensions: Samples.
Writing a DAS client in C
Running DAS on amazon or google app engine. And seeing what changes have to be made to the dazzle code to enable this. I'd favour app engine.
speeding up annotation retrieval for multiple segment IDs (e.g. retrieving all features for a big alignment)
using jsDas with JalviewLite
The semantic web, RDF and DAS.
DAS authentication and security
