Difference between revisions of "DASWorkshop2010"
From BioDAS
(→Day 2) |
(→Day 2) |
||
| Line 27: | Line 27: | ||
|Progress to report on linking EMBOSS and DAS | |Progress to report on linking EMBOSS and DAS | ||
|Peter Rice | |Peter Rice | ||
| − | |[ | + | |[] |
|- | |- | ||
|11:00 | |11:00 | ||
| − | | | + | |Visualization of sequence features with STRAP |
| − | | | + | |Christoph Gille |
| − | |[ | + | |[] |
|- | |- | ||
|11:20 | |11:20 | ||
| − | | | + | |easyDAS: a hosted solution for DAS server creation |
|Bernat Gel | |Bernat Gel | ||
|[http://www.sanger.ac.uk/Software/analysis/das/presentations/DASGenExp3.ppt presentation] | |[http://www.sanger.ac.uk/Software/analysis/das/presentations/DASGenExp3.ppt presentation] | ||
|- | |- | ||
|11:40 | |11:40 | ||
| − | | | + | |Update on the DAS Registry |
| − | | | + | |Jonathan Warren |
| − | |[ | + | |[] |
|- | |- | ||
|12:00 | |12:00 | ||
| − | | | + | |DAS service to provide information on 3D motifs- PDBe |
| − | | | + | |Adel Golovin |
| − | |[ | + | |[] |
|- style="background:#ffdead;" | |- style="background:#ffdead;" | ||
|12:15-13:30 | |12:15-13:30 | ||
| Line 53: | Line 53: | ||
|- | |- | ||
|13:30 | |13:30 | ||
| − | | | + | |DAS Writeback and its integration in Dasty2 as a proof of concept |
| − | | | + | |Gustavo Salazar |
| − | |[ | + | |[] |
|- | |- | ||
|13:50 | |13:50 | ||
| Line 106: | Line 106: | ||
|- | |- | ||
|17:10 | |17:10 | ||
| − | | | + | |Update on the collaborative, web-based version of Apollo |
|Gregg Helt | |Gregg Helt | ||
|[http://www.sanger.ac.uk/Software/analysis/das/presentations/Trellis_Mar2009.pptx presentation] | |[http://www.sanger.ac.uk/Software/analysis/das/presentations/Trellis_Mar2009.pptx presentation] | ||
Revision as of 07:49, 16 March 2010
DAS Workshop 2010 Schedule
Day 2
| Time | ProjectName | Speaker | Presentation |
|---|---|---|---|
| 09:30 - 10:00 | Arrival - Tea, Coffee. | ||
| 10:00 | Opening talk | Tim Hubbard | presentation |
| 10:20 | Collaborative genomics with DAS- a new interactive DAS client | Thomas Down | [] |
| 10:40 | Progress to report on linking EMBOSS and DAS | Peter Rice | [] |
| 11:00 | Visualization of sequence features with STRAP | Christoph Gille | [] |
| 11:20 | easyDAS: a hosted solution for DAS server creation | Bernat Gel | presentation |
| 11:40 | Update on the DAS Registry | Jonathan Warren | [] |
| 12:00 | DAS service to provide information on 3D motifs- PDBe | Adel Golovin | [] |
| 12:15-13:30 | Lunch break | ||
| 13:30 | DAS Writeback and its integration in Dasty2 as a proof of concept | Gustavo Salazar | [] |
| 13:50 | Integration of info on gene expression and its temporal and spatial localization | Jose Ramon Macias | presentation |
| 14:10 | DAS - writeback | Gustavo Salazar | presentation |
| 14:30 | Interaction DAS | Hagen Blankenburg | presentation |
| 14:50 | DAS for ENCODE data coordination | Felix Kokocinski | |
| 15:10-15:30 | coffee break | ||
| 15:30 | A web resource for selecting epitopes for antibodies | Niall Haslam | presentation |
| 15:50 | DAS Searches | Andreas Prlic | presentation |
| 16:10 | A karyotype DAS client | Rafael Jimenez | presentation |
| 16:30 | DASher, a standalone Java client for DAS protein sequence features | David Messina | presentation pdf |
| 16:50 | Data Federation - BioMart & DAS | Syed Haider | presentation |
| 17:10 | Update on the collaborative, web-based version of Apollo | Gregg Helt | presentation |
| 17:30 | Discussion/talk about activity organisation of next day - preliminary groups and chairs of groups | ||
