DASworkshop200903Day3
This page is for people attending day 3 of the workshop to put down their ideas and volunteer to host a session on a topic or write some minutes of the meeting on the biodas wiki site, so we have a record of what was discussed and what the outcomes were or ideally some code to work with.
- My current suggestion for the format would be to have the 1.6 spec and the DAS1/DAS2 merger topics discussed in the first 2 hrs of the day and be open to everybody. Then have groups split up into the remainder of the topics?
Contents
- 1 DAS 1.6 spec and where to go with the Registry
- 2 DAS1/DAS2 merger
- 3 DAS writeback
- 4 Adapting Java DAS client libraries for alignment and PDB file retrieval for clients that dont use BioJava
- 5 Ajax das client/server library (allow DAS server discovery and retrieval on the browser page)
- 6 Graphical Representation of data
- 7 DAS interfaces to sequence analysis tools
- 8 BioSapiens ontology lookup
- 9 DAS vs. ontologies, how and why
DAS 1.6 spec and where to go with the Registry
Host
Jonathan Warren and Andy Jenkinson
Secretary
Jonathan Warren and Andy Jenkinson
DAS1/DAS2 merger
DAS writeback
Adapting Java DAS client libraries for alignment and PDB file retrieval for clients that dont use BioJava
Ajax das client/server library (allow DAS server discovery and retrieval on the browser page)
Graphical Representation of data
DAS interfaces to sequence analysis tools
BioSapiens ontology lookup
DAS vs. ontologies, how and why
This topic was suggeseted because I'd like to understand how 'ontologies' (in general) are implemented in DAS and how this relates to the feature annotation models in Chado or GFF3, for example. How should an annotator use an ontology? How should the use of an ontology be reflected in the client behaviour? What about DAS ontology servers (and the 'term' DAS command)? This topic dosn't really fit with the idea of a 'hackathon', but is a very interesting aspect of DAS. i.e.
What are:
- Ontodas
- DAS Protein Ontology
- Ontology Lookup Service
- The BioSapians (feature type?) ontology
- The ontology of 'input filters' from EMbrace
- ???
