DASworkshop200903
From BioDAS
Revision as of 11:35, 4 March 2009 by Andy.jenkinson (talk)
DAS workshop March 9th-11th 2009 Genome Campus, Hinxton
BioSapiens Network
Day 1
| Time | ProjectName | Speaker | Presentation |
|---|---|---|---|
| 09:30 - 10:00 | Arrival - Tea, Coffee. | ||
| 10:00 | Opening talk | Tim Hubbard | |
| 10:20 | Collaborative Annotation tool (MaDAS) | Victor de la Torre | |
| 10:40 | Jalview / VAMSAS | Jim Procter / Geoff Barton | |
| 11:00 | Pfam | Rob Finn | |
| 11:20 | DASgenexp | Bernat Gel | |
| 11:40 | Dasty2 | Rafael Jimenez | |
| 12:00 | EMBOSS as an efficient DAS annotation source | Peter Rice, Mahmut Uludag | |
| 12:15-13:30 | Lunch break | ||
| 13:30 | Ensembl | James Smith | |
| 13:50 | Integration of info on gene expression and its temporal and spatial localization | Jose Ramon Macias | |
| 14:10 | DAS - writeback | Gustavo Salazar | |
| 14:30 | Interaction DAS | Hagen Blankenburg | |
| 14:50 | DAS for ENCODE data coordination | Felix Kokocinski | |
| 15:10-15:30 | coffee break | ||
| 15:30 | A web resource for selecting epitopes for antibodies | Niall Haslam | |
| 15:50 | DAS Searches | Andreas Prlic | |
| 16:10 | A karyotype DAS client | Rafael Jimenez | |
| 16:30 | DASher, a standalone Java client for DAS protein sequence features | David Messina | |
| 16:50 | Data Federation - BioMart & DAS | Syed Haider | |
| 17:10 | Trellis DAS2 framework- which includes the DAS1-->DAS2 proxy and alpha UCSC DAS2 server | Gregg Helt | |
| 17:30 | Discussion/talk about activity organisation of next day - preliminary groups and chairs of groups |
Day 2
| Time | Title | Speaker | Resources |
|---|---|---|---|
| 09:15 - 10:00 | DAS - Technical Introduction | Phil Jones | Presentation: Powerpoint Open Document Format |
| 10:00 - 10:35 | DAS Introductory Tutorial - DAS servers and the DAS Registration Service | Phil Jones | Introductory Tutorial |
| 10:35 - 11:15 | DAS - Client Demonstration: Ensembl, grouping and histograms | Eugene Kulesha | |
| 11:15 - 11:40 | Coffee break | ||
| 11:40 - 12:10 | Dasty2 | Rafael Jimenez | |
| 12:10 - 12:40 | SPICE, Mapping features on 3D, viewing alignments | Andreas Prlic | SPICE links |
| 12:40 - 13:40 | Lunch break | ||
| 13:40 - 14:10 | Pepper | Jose Ramon Macias | http://biocomp.cnb.csic.es/das |
| 14:10 - 15:10 | DAS: Setting Up Your Own Server. In this section the group will split into two tracks - one for Perl programmers and one for Java programmers. | Proserver: Andy Jenkinson Dazzle: Andreas Prlic |
ProServer: writing a SourceAdaptor Dazzle: using existing plugins |
| 15:10 - 15:30 | Coffee break | ||
| 15:30 - 16:30 | DAS - Coding a Client. | Bio::Das::Lite (Perl) - Andy Jenkinson Dasobert (Java) - Andreas Prlic |
Bio::Das::Lite tutorial |
