DASworkshop200802:spice

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Revision as of 17:29, 24 February 2008 by Andreas (talk) (New page: =SPICE= ==a browser for protein sequences, structures and their annotations== There are various ways to launch SPICE. ===Ensembl=== The PDB_Spice DAS track in the Ensembl protview an...)
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SPICE

a browser for protein sequences, structures and their annotations

There are various ways to launch SPICE.

Ensembl

The PDB_Spice DAS track in the Ensembl protview and contigviews allows to show protein structure mappings/

e.g. http://www.ensembl.org/Homo_sapiens/protview?peptide=ENSP00000365116

enable the track in this view and click on the track and then again on the protein structure image. This allows you to launch SPICE.

Pfam

SPICE can be easily linked to from external web sites.

Find the protein structure 1cdg in Pfam: http://pfam.sanger.ac.uk/structure?entry=1cdg&type=Structure

click on view structure and select SPICE again.

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