DAS workshop February 25th, 26th Genome Campus, Hinxton

BioSapiens Network

Day 1

14:10

Time	ProjectName	Speaker
09:30 - 10:00	Arrival - Tea, Coffee.
10:00	Opening talk	Tim Hubbard
10:20	CNIO	Osvaldo Grana
10:40	Jalview / VAMSAS	Jim Procter / Geoff Barton
11:00	Pfam	Rob Finn
11:20	UniProt / MyDAS	Phil Jones
11:40	Dasty2	Rafael Jimenez
12:00	short demo: Dastard	Thomas Down
12:15-13:30	Lunch break
13:30	Ensembl	James Smith / Eugene Kulesha
13:50	DAS registry, SPICE	Andreas Prlic
DAS - writeback	Asja Grzibovska
14:30	Interaction DAS	Hagen Blankenburg / Mario Albrecht
14:50	PeppeR	Jose Ramon Macias
15:10-15:30	coffee break
15:30	Annotation Pipeline	Niall Haslam
15:50	Annotation type ontology	Gabby Reeves
16:10	Proserver	Roger Pettett / Andy Jenkinson
16:30	BioMart & DAS	Syed Haider / Arek Kasprzyk
17:00	Open discussion	How to improve interopability, future extensions

Time	Title	Speaker	Resources
09:15 - 10:00	DAS - Technical Introduction	Phil Jones	Presentation: Powerpoint Open Document Format PDF
10:00 - 10:35	DAS Introductory Tutorial - DAS servers and the DAS Registration Service	Phil Jones	Introductory Tutorial
10:35 - 11:15	DAS - Client Demonstration: Ensembl, grouping and histograms	Eugene Kulesha
11:15 - 11:40	Coffee break
11:40 - 12:10	Dasty2	Rafael Jimenez
12:10 - 12:40	SPICE, Mapping features on 3D, viewing alignments	Andreas Prlic	SPICE links
12:40 - 13:40	Lunch break
13:40 - 14:10	Pepper	Jose Ramon Macias	http://biocomp.cnb.csic.es/das
14:10 - 15:10	DAS: Setting Up Your Own Server. In this section the group will split into two tracks - one for Perl programmers and one for Java programmers.	Proserver: Andy Jenkinson Dazzle: Andreas Prlic	ProServer: writing a SourceAdaptor Dazzle: using existing plugins Dazzle: writing a plugin Chromosome 21 GFF File
15:10 - 15:30	Coffee break
15:30 - 16:30	DAS - Coding a Client.	Bio::Das::Lite (Perl) - Andy Jenkinson Dasobert (Java) - Andreas Prlic	Bio::Das::Lite tutorial