DASWorkshop2011

The 2011 DAS Workshop will be held on 2-4 Marchl at the EBI Hinxton campus.

• Information & registration: http://www.ebi.ac.uk/training/onsite/110302DAS.html

DAS Workshop 2011 Schedule

All 3 days will be held in the EBI training room.

Day 1

Some knowledge/experience of PERL or Java and or Javascript would be beneficial for the hands on training day.

Example DAS commands can be found here as a DAS quick reference guide: DAS examples

Time	Title	Speaker	Resources
8:45 - 9:30	Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus.
9:30 - 09:50	Coffee is served outside the training room
09:50 - 10:00	Welcome and Introduction to the Workshop	Jonathan Warren
10:00 - 10:20	DAS - Introduction/Overview	Andy Jenkinson	Introduction Technical Introduction
10:20 - 10:35	The DAS Game	Rafael Jimenez	The DAS Game
10:35 - 11:25	Hands-on tutorial: using DAS software, 10 minute introduction of some DAS implementations (Bernat)	Bernat Gel, Thomas Down, Jose Villavaces	Implementations. PPT Creating DAS sources from GFF files supplied using easyDAS (Bernat), Viewing DAS sources using Dalliance (Thomas) PDF-or- Dasty3 (Jose) PDF
11:25 - 12:15	Hands-on programming tutorial: Creating a custom DAS source	Gustavo, Andy	10 minute introduction to DAS servers, MyDAS -or- ProServer
12:15 - 13:15	Lunch break
13:15 - 14:50	Tutorial - DAS servers continued	Andy Jenkinson and Gustavo Salazar	Perl(ProServer) and Java(MyDAS)
14:50 - 15:10	Hands on Tutorial The DAS registry: Short introduction talk then hands on tutorial	Jonathan Warren	DAS Registry Tutorial
15:10 - 15:30	Cofee Break
15:30 - 17:15	Hands-on programming tutorial: DAS client libraries, 10 minute introduction	Andy, Rafael, Leyla, Jose, Bernat	Bio::Das::Lite-or- JDAS -or- JSDAS. Each will cover sources, sequence & features using the same examples
17:30	Departure from Campus to Cambridge Travel Lodge and Leisure Park at circa 17:30 hrs.
19:00	Dinner at Browns directions from Travel lodge The Private Dining Room 7.00 pm for 7.30 pm sit down. There is a large bus for this journey at 17.30 and so we encourage campus people who would normally use the campus bus to take the workshop bus. Browns is approx 25 minute walk from the travel lodge we are currently suggesting a pub stop at The Snug on the way. People will be responsible for getting back to their hotel or home after the restaurant.

Day 2

Preliminary schedule where the order and content may still change considerably.

Time	ProjectName	Speaker	Presentation
8:45 - 9:30	Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus.
09:30 - 10:00	Arrival - Tea, Coffee.
10:00	Opening talk	Tim Hubbard	PDF
10:20	Dalliance- a new interactive DAS client	Thomas Down	HTML Slides
10:40	DAS search	Gustavo Salazar	PPT, BTN
11:00	Short break		[]
11:20	easyDAS: a hosted solution for DAS server creation	Bernat Gel	BTN
11:40	Update on the DAS Registry	Jonathan Warren	PPT
12:00	WebApollo: Extending JBrowse to support DAS and genome annotation editing	Gregg Helt	PPTX, PDF
12:15-13:30	Lunch break
13:30	EBI Search	Andy Jenkinson	PPTX
13:50	Dealing with Personal Genomes using DAS	Manuel Corpas	[]
14:10	Dasty update	Jose Villaveces	PPT
14:30	EMBOSS as a DAS client	Peter Rice, Mahmut Uludag	PPT
14:50	Jalview Update	James Procter	PDF
15:10-15:30	coffee break
15:30	Setting up a BAM based DAS source in GBrowse experience.	Frank Schwach	PDF, []
15:50	Authentication and Authorization for writeback and secure DAS data sources	Gustavo and Andy	PPT, BTN
16:10	Discussion/talk about activity organisation of next day - preliminary groups and chairs of groups		[]
16:30
16:50
17:10	Bus Leaves for Cambridge Travel Lodge

Day 3

• Suggested Topics
• Minutes
• Action Plan
• DAS Paper proposal

Location is the EBI Training Room

As per other days -Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus.

Start at 10am

Departure 16:00 hrs form campus to Travelodge in order for people to get planes and trains etc back home.

Finish at 4pm.