DASWorkshop2010
From BioDAS
The 2010 DAS Workshop will be held on 7-9 April at the EBI Hinxton campus.
- Information & registration: http://www.ebi.ac.uk/training/onsite/DAS_070410.html
DAS Workshop 2010 Schedule
Day 1
| Time | Title | Speaker | Resources |
|---|---|---|---|
| 8:45 - 9:30 | Minibus/Taxis to pick attendees up from hotels and bring to Campus | ||
| 9:30 - 10:00 | Coffee is served outside the training room | ||
| 10:00 - 10:10 | Welcome and Introduction to the Workshop | Jonathan Warren | |
| 10:10 - 11:10 | DAS - Technical Introduction | Andy Jenkinson | Powerpoint 2008 |
| 11:10 - 11:30 | The DAS Registration Service | Jonathan Warren | The Registry |
| 11:30 - 12:15 | Putting it all together | Rob Finn | presentation |
| 12:15 - 13:15 | Lunch break | ||
| 13:15 - 15:10 | Hands On Tutorial - Setting up a DAS Server and creating a DAS Client. The room will be split into two groups: one for Java and one for Perl. | Jonathan Warren and Andy Jenkinson | Java server: Dazzle tutorial Java client: Dasobert tutorial |
| 15:10 - 15:30 | Coffee break | ||
| 15:30 - 16:30 | Hands On Tutorial - continued | ||
Day 2
| Time | ProjectName | Speaker | Presentation |
|---|---|---|---|
| 09:30 - 10:00 | Arrival - Tea, Coffee. | ||
| 10:00 | Opening talk | Tim Hubbard | [] |
| 10:20 | Collaborative genomics with DAS- a new interactive DAS client | Thomas Down | [] |
| 10:40 | Progress to report on linking EMBOSS and DAS | Peter Rice | [] |
| 11:00 | Visualization of sequence features with STRAP | Christoph Gille | [] |
| 11:20 | easyDAS: a hosted solution for DAS server creation | Bernat Gel | [] |
| 11:40 | Update on the DAS Registry | Jonathan Warren | [] |
| 12:00 | DAS service to provide information on 3D motifs- PDBe | Adel Golovin | [] |
| 12:15-13:30 | Lunch break | ||
| 13:30 | DAS Writeback and its integration in Dasty2 as a proof of concept | Gustavo Salazar | [] |
| 13:50 | KaryoDAS: An Interactive Genome Visualization Tool Using DECIPHER Data | Eugene Bragin/Manuel Corpas | [] |
| 14:10 | jsDAS: A javascript DAS client library | Jose Villaveces/ Bernat Gel | [] |
| 14:30 | Interaction DAS | Hagen Blankenburg | [] |
| 14:50 | Data integration in ENFIN using standards; the EnCore DAS service | Rafael Jimenez | [] |
| 15:10-15:30 | coffee break | ||
| 15:30 | Text Mining DAS source | Maximilian Haussler | [] |
| 15:50 | Update on the collaborative, web-based version of Apollo | Gregg Helt | [] |
| 16:10 | From Pfam Das Alignments to Widgets | Prasad Gunasekaran | [] |
| 16:30 | Discussion/talk about activity organisation of next day - preliminary groups and chairs of groups | [] | |
| 16:50 | |||
| 17:10 | Bus Leaves for Cambridge Travel Lodge | [] | |
| 19:00 | Dinner at Alimentum The Private Dining Room 7.00 pm for 7.30 pm sit down. | ||
Day 3
Suggested Topics:
Content negotiation and efficient data formats
how / if the big amounts data can be served via das
DAS for high-density quantitative data.
1: From molecules to sets. 2: Other dimensions: Samples.
Writing a DAS client in C
Running DAS on amazon or google app engine. And seeing what changes have to be made to the dazzle code to enable this. I'd favour app engine.
speeding up annotation retrieval for multiple segment IDs (e.g. retrieving all features for a big alignment)
using jsDas with JalviewLite
The semantic web, RDF and DAS.
DAS authentication and security
