Difference between revisions of "DASWorkshop2011"

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Revision as of 15:50, 1 February 2011

The 2011 DAS Workshop will be held on 2-4 Marchl at the EBI Hinxton campus.


DAS Workshop 2011 Schedule

The first 2 days will be held in the EBI training room. 3rd day room to be announced.

Day 1

Time Title Speaker Resources
8:45 - 9:30 Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus.
9:30 - 10:00 Coffee is served outside the training room
10:00 - 10:10 Welcome and Introduction to the Workshop Jonathan Warren
10:10 - 10:30 DAS - Introduction/Overview Andy Jenkinson Basic Introduction Technical Introduction
10:30 - 10:40 The DAS Game Rafael Jimenez Game cards
10:40 - 11:40 Hands on DAS Server Tutorials - Setting up a quick source for sharing data with your colleagues using Proserver or MyDAS - The room will be split into two groups: one for Java and one for Perl. Andy Jenkinson, Gustavo Salazar Introduction talk: PPT Java:MyDAS Part 1 Perl:ProServer Part 1
11:40 - 12:15 The DAS Registry and registering your source Jonathan Warren RegistryTutorial2010
12:15 - 13:15 Lunch break
13:15 - 14:15 Tutorial - DAS servers continued Andy Jenkinson, Rafael Jimenez, Gustavo Salazar Java: MyDAS Part 2MyDAS Part 3Perl:ProServer Part 2ProServer Part 3
14:15 - 14:35 DAS clients - Putting it all together Rob Finn 2009 Powerpoint
2009 PDF
14:35 - 15:10 Talk and Tutorial -DAS client libraries to query DAS sources Andy Jenkinson, Rafael Jimenez, Jose Villaveces Javascript:JSDAS Tutorial, Java:Dasobert Tutorial, Perl:Bio::Das::Lite
15:10 - 15:30 Cofee Break
15:30 - 17:00 Hands On Tutorial - continued
17:15 Departure from Campus to Cambridge Leisure Park at circa 17:15 hrs.
19:00 Dinner at [Restaurant to be confirmed - likely walking distance to the travel lodge] The Private Dining Room 7.00 pm for 7.30 pm sit down.

Day 2

Preliminary schedule where the order and content may still change considerably.

Time ProjectName Speaker Presentation
8:45 - 9:30 Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus.
09:30 - 10:00 Arrival - Tea, Coffee.
10:00 Opening talk Tim Hubbard []
10:20 Dalliance- a new interactive DAS client Thomas Down []
[]
11:00 DAS search Gustavo Salazar []
11:20 easyDAS: a hosted solution for DAS server creation Bernat Gel PPT
11:40 Update on the DAS Registry Jonathan Warren PPT
12:00 Gregg Helt WebApollo: Extending JBrowse to support DAS and genome annotation editing []
12:15-13:30 Lunch break
13:30 EBI Search Andy Jenkinson []
13:50 Dealing with Personal Genomes using DAS Manuel Corpas []
14:10 Dasty update Jose Villaveces (and Leyla Garcia) PPT
14:30 []
14:50 [], []
15:10-15:30 coffee break
15:30
15:50 []
16:10 []
16:30 Discussion/talk about activity organisation of next day - preliminary groups and chairs of groups
16:50
17:10 Bus Leaves for Cambridge Travel Lodge

Day 3

As per other days -Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus.

Start at 10am 

Departure 16:00 hrs form campus to Travellodge in order for people to get planes and trains etc back home.

Finish at 4pm.

Suggested Topics:

Discussion about fitting alternative data formats into the DAS ecosystem (TAD)

Security - authorization and authentication for clients, servers, registry (GS, AJ, JW)

Genome alignments in DAS (TAD)

Improving interactivity of DAS data (TAD)

Can we extend DAS to give better support for more interactive client navigation? Things like next/previous feature buttons.

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