Difference between revisions of "DASWorkshop2011"

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Revision as of 17:00, 31 January 2011

The 2011 DAS Workshop will be held on 2-4 Marchl at the EBI Hinxton campus.


DAS Workshop 2011 Schedule

The first 2 days will be held in the EBI training room. 3rd day room to be announced.

Day 1

Time Title Speaker Resources
8:45 - 9:30 Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus.
9:30 - 10:00 Coffee is served outside the training room
10:00 - 10:10 Welcome and Introduction to the Workshop Jonathan Warren
10:10 - 10:30 DAS - Introduction/Overview Andy Jenkinson Basic Introduction Technical Introduction
10:30 - 10:40 The DAS Game Rafael Jimenez Game cards
10:40 - 11:40 Hands on DAS Server Tutorials - Setting up a quick source for sharing data with your colleagues using Proserver or MyDAS - The room will be split into two groups: one for Java and one for Perl. Andy Jenkinson, Gustavo Salazar Introduction talk: PPT Java:MyDAS Part 1 Perl:ProServer Part 1
11:40 - 12:15 The DAS Registry and registering your source Jonathan Warren RegistryTutorial2010
12:15 - 13:15 Lunch break
13:15 - 14:15 Tutorial - DAS servers continued Andy Jenkinson, Rafael Jimenez, Gustavo Salazar Java: MyDAS Part 2MyDAS Part 3Perl:ProServer Part 2ProServer Part 3
14:15 - 14:35 DAS clients - Putting it all together Rob Finn 2009 Powerpoint
2009 PDF
14:35 - 15:10 Talk and Tutorial -DAS client libraries to query DAS sources Andy Jenkinson, Rafael Jimenez, Jose Villaveces Javascript:JSDAS Tutorial, Java:Dasobert Tutorial, Perl:Bio::Das::Lite
15:10 - 15:30 Cofee Break
15:30 - 17:00 Hands On Tutorial - continued
17:15 Departure from Campus to Cambridge Leisure Park at circa 17:15 hrs.

Day 2

Preliminary schedule where the order and content may still change considerably.

Time ProjectName Speaker Presentation
8:45 - 9:30 Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus.
09:30 - 10:00 Arrival - Tea, Coffee.
10:00 Opening talk Tim Hubbard []
10:20 Dalliance- a new interactive DAS client Thomas Down []
10:40 Dealing with Personal Genomes using DAS Manuel Corpas []
11:00 DAS search Gustavo Salazar []
11:20 easyDAS: a hosted solution for DAS server creation Bernat Gel PPT
11:40 Update on the DAS Registry Jonathan Warren PPT
12:00 Gregg Helt WebApollo: Extending JBrowse to support DAS and genome annotation editing []
12:15-13:30 Lunch break
13:30 EBI Search Andy Jenkinson []
13:50 []
14:10 Dasty update Jose Villaveces (and Leyla Garcia) PPT
14:30 []
14:50 [], []
15:10-15:30 coffee break
15:30
15:50 []
16:10 []
16:30 Discussion/talk about activity organisation of next day - preliminary groups and chairs of groups
16:50
17:10 Bus Leaves for Cambridge Travel Lodge
19:00 Dinner at [Restaurant to be confirmed - likely walking distance to the travel lodge] The Private Dining Room 7.00 pm for 7.30 pm sit down.

Day 3

As per other days -Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus.

Start at 10am

Departure 16:00 hrs form campus to Travellodge in order for people to get planes and trains etc back home.

Finish at 4pm.

Suggested Topics:

Discussion about fitting alternative data formats into the DAS ecosystem