Difference between revisions of "DASWorkshop2011"
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==Security - authorization and authentication for clients, servers, registry (GS, AJ, JW)== | ==Security - authorization and authentication for clients, servers, registry (GS, AJ, JW)== | ||
==Genome alignments in DAS (TAD)== | ==Genome alignments in DAS (TAD)== | ||
| + | [[DAS1.6E#Alignment|Some background]]. | ||
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==Improving interactivity of DAS data (TAD)== | ==Improving interactivity of DAS data (TAD)== | ||
Revision as of 16:31, 4 February 2011
The 2011 DAS Workshop will be held on 2-4 Marchl at the EBI Hinxton campus.
- Information & registration: http://www.ebi.ac.uk//training/onsite/110302DAS.html
Contents
- 1 DAS Workshop 2011 Schedule
- 1.1 Day 1
- 1.2 Day 2
- 1.3 Day 3
- 1.4 Discussion about fitting alternative data formats into the DAS ecosystem (TAD)
- 1.5 Security - authorization and authentication for clients, servers, registry (GS, AJ, JW)
- 1.6 Genome alignments in DAS (TAD)
- 1.7 Improving interactivity of DAS data (TAD)
- 1.8 Dasobert 2
DAS Workshop 2011 Schedule
The first 2 days will be held in the EBI training room. 3rd day room to be announced.
Day 1
| Time | Title | Speaker | Resources |
|---|---|---|---|
| 8:45 - 9:30 | Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus. | ||
| 9:30 - 10:00 | Coffee is served outside the training room | ||
| 10:00 - 10:10 | Welcome and Introduction to the Workshop | Jonathan Warren | |
| 10:10 - 10:30 | DAS - Introduction/Overview | Andy Jenkinson | |
| 10:30 - 10:40 | The DAS Game | Rafael Jimenez | |
| 10:40 - 11:40 | Hands on DAS Server Tutorials - Setting up a quick source for sharing data with your colleagues. | Andy Jenkinson and Gustavo Salazar | Perl(ProServer) and Java(MyDAS) |
| 11:40 - 12:15 | Registering your source | Jonathan Warren | The DAS Registry |
| 12:15 - 13:15 | Lunch break | ||
| 13:15 - 14:15 | Tutorial - DAS servers continued | Andy Jenkinson and Gustavo Salazar | Perl(ProServer) and Java(MyDAS) |
| 14:15 - 14:35 | Automated creation of DAS servers | Bernat Gel | easyDAS |
| 14:35 - 14:50 | DAS clients - Putting it all together | Leyla J. Garcia | |
| 14:50 - 15:25 | Talk and Tutorial -DAS client libraries to query DAS sources | Andy Jenkinson, Jose Villaveces and Rafael Jimenez | Perl(Bio::Das::Lite), Javascript(jsDAS) and Java(JAXB) |
| 15:25 - 15:45 | Cofee Break | ||
| 15:45 - 17:15 | Hands On Tutorial - continued | ||
| 17:30 | Departure from Campus to Cambridge Leisure Park at circa 17:30 hrs. | ||
| 19:00 | Dinner at Browns The Private Dining Room 7.00 pm for 7.30 pm sit down. | ||
Day 2
Preliminary schedule where the order and content may still change considerably.
| Time | ProjectName | Speaker | Presentation |
|---|---|---|---|
| 8:45 - 9:30 | Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus. | ||
| 09:30 - 10:00 | Arrival - Tea, Coffee. | ||
| 10:00 | Opening talk | Tim Hubbard | [] |
| 10:20 | Dalliance- a new interactive DAS client | Thomas Down | [] |
| [] | |||
| 11:00 | DAS search | Gustavo Salazar | [] |
| 11:20 | easyDAS: a hosted solution for DAS server creation | Bernat Gel | PPT |
| 11:40 | Update on the DAS Registry | Jonathan Warren | PPT |
| 12:00 | Gregg Helt | WebApollo: Extending JBrowse to support DAS and genome annotation editing | [] |
| 12:15-13:30 | Lunch break | ||
| 13:30 | EBI Search | Andy Jenkinson | [] |
| 13:50 | Dealing with Personal Genomes using DAS | Manuel Corpas | [] |
| 14:10 | Dasty update | Jose Villaveces (and Leyla Garcia) | PPT |
| 14:30 | EMBOSS as a DAS client | Peter Rice, Mahmut Uludag | [] |
| 14:50 | [], [] | ||
| 15:10-15:30 | coffee break | ||
| 15:30 | |||
| 15:50 | [] | ||
| 16:10 | [] | ||
| 16:30 | Discussion/talk about activity organisation of next day - preliminary groups and chairs of groups | ||
| 16:50 | |||
| 17:10 | Bus Leaves for Cambridge Travel Lodge | ||
Day 3
As per other days -Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus.
Start at 10am
Departure 16:00 hrs form campus to Travellodge in order for people to get planes and trains etc back home.
Finish at 4pm.
Suggested Topics:
Discussion about fitting alternative data formats into the DAS ecosystem (TAD)
See proposal from 2010 workshop.
Security - authorization and authentication for clients, servers, registry (GS, AJ, JW)
Genome alignments in DAS (TAD)
Improving interactivity of DAS data (TAD)
Can we extend DAS to give better support for more interactive client navigation? Things like next/previous feature buttons.
Customized html labels/pop ups? (JW)
Dasobert 2
Improvements, Schema Driven? (JW, RJ))
