Difference between revisions of "DASWorkshop2010"
From BioDAS
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|Progress to report on linking EMBOSS and DAS | |Progress to report on linking EMBOSS and DAS | ||
|Peter Rice | |Peter Rice | ||
| − | |[] | + | |[http://www.ebi.ac.uk/~aj/das_workshop_2010/slides/rice_emboss.ppt PPT] |
|- | |- | ||
|11:00 | |11:00 | ||
|1.6 Spec Summary | |1.6 Spec Summary | ||
|Jonathan Warren | |Jonathan Warren | ||
| − | |[] | + | |[http://www.ebi.ac.uk/~aj/das_workshop_2010/slides/warren_1.6spec.ppt PPT] |
|- | |- | ||
|11:20 | |11:20 | ||
|easyDAS: a hosted solution for DAS server creation | |easyDAS: a hosted solution for DAS server creation | ||
|Bernat Gel | |Bernat Gel | ||
| − | |[] | + | |[http://www.ebi.ac.uk/~aj/das_workshop_2010/slides/bernat_easydas.ppt PPT] |
|- | |- | ||
|11:40 | |11:40 | ||
|Update on the DAS Registry | |Update on the DAS Registry | ||
|Jonathan Warren | |Jonathan Warren | ||
| − | |[] | + | |[http://www.ebi.ac.uk/~aj/das_workshop_2010/slides/warren_registry.ppt PPT] |
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|12:00 | |12:00 | ||
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|DAS Writeback and its integration in Dasty2 as a proof of concept | |DAS Writeback and its integration in Dasty2 as a proof of concept | ||
|Gustavo Salazar | |Gustavo Salazar | ||
| − | |[] | + | |[http://www.ebi.ac.uk/~aj/das_workshop_2010/slides/gustavo_writeback.ppt PPT] |
|- | |- | ||
|13:50 | |13:50 | ||
|KaryoDAS: An Interactive Genome Visualization Tool Using DECIPHER Data | |KaryoDAS: An Interactive Genome Visualization Tool Using DECIPHER Data | ||
|Manuel Corpas (and Eugene Bragin) | |Manuel Corpas (and Eugene Bragin) | ||
| − | |[] | + | |[http://www.ebi.ac.uk/~aj/das_workshop_2010/slides/corpas_decipher.ppt PPT] |
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|14:10 | |14:10 | ||
|jsDAS: A javascript DAS client library | |jsDAS: A javascript DAS client library | ||
|Jose Villaveces (and Bernat Gel) | |Jose Villaveces (and Bernat Gel) | ||
| − | |[] | + | |[http://www.ebi.ac.uk/~aj/das_workshop_2010/slides/jose_jsdas.ppt PPT] |
|- | |- | ||
|14:30 | |14:30 | ||
|Interaction DAS | |Interaction DAS | ||
|Hagen Blankenburg | |Hagen Blankenburg | ||
| − | |[] | + | |[http://www.ebi.ac.uk/~aj/das_workshop_2010/slides/hagen_dasformi.pdf PDF] |
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|14:50 | |14:50 | ||
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|15:30 | |15:30 | ||
| − | |Text Mining DAS source | + | |<del>Text Mining DAS source</del> |
| − | |Maximilian Haussler | + | |<del>Maximilian Haussler</del> |
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|15:50 | |15:50 | ||
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|From Pfam Das Alignments to Widgets | |From Pfam Das Alignments to Widgets | ||
|Prasad Gunasekaran | |Prasad Gunasekaran | ||
| − | |[] | + | |[http://www.ebi.ac.uk/~aj/das_workshop_2010/slides/prasad_pfam.pdf PDF] |
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|16:30 | |16:30 | ||
|Discussion/talk about activity organisation of next day - preliminary groups and chairs of groups | |Discussion/talk about activity organisation of next day - preliminary groups and chairs of groups | ||
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|Bus Leaves for Cambridge Travel Lodge | |Bus Leaves for Cambridge Travel Lodge | ||
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Revision as of 12:04, 5 May 2010
The 2010 DAS Workshop will be held on 7-9 April at the EBI Hinxton campus.
- Information & registration: http://www.ebi.ac.uk/training/onsite/DAS_070410.html
DAS Workshop 2010 Schedule
All 3 days will be held in the EBI training room.
Day 1
| Time | Title | Speaker | Resources |
|---|---|---|---|
| 8:45 - 9:30 | Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus. | ||
| 9:30 - 10:00 | Coffee is served outside the training room | ||
| 10:00 - 10:10 | Welcome and Introduction to the Workshop | Jonathan Warren | |
| 10:10 - 10:30 | DAS - Introduction/Overview | Andy Jenkinson | Basic Introduction Technical Introduction |
| 10:30 - 10:40 | The DAS Game | Rafael Jimenez | Game cards |
| 10:40 - 11:40 | Hands on DAS Server Tutorials - Setting up a quick source for sharing data with your colleagues using Proserver or MyDAS - The room will be split into two groups: one for Java and one for Perl. | Andy Jenkinson, Gustavo Salazar | Introduction talk: PPT Java:MyDAS Part 1 Perl:ProServer Part 1 |
| 11:40 - 12:15 | The DAS Registry and registering your source | Jonathan Warren | RegistryTutorial2010 |
| 12:15 - 13:15 | Lunch break | ||
| 13:15 - 14:15 | Tutorial - DAS servers continued | Andy Jenkinson, Rafael Jimenez, Gustavo Salazar | Java: MyDAS Part 2MyDAS Part 3Perl:ProServer Part 2ProServer Part 3 |
| 14:15 - 14:35 | DAS clients - Putting it all together | Rob Finn | |
| 14:35 - 15:10 | Talk and Tutorial -DAS client libraries to query DAS sources | Andy Jenkinson, Rafael Jimenez, Jose Villaveces | Javascript:JSDAS Tutorial, Java:Dasobert Tutorial, Perl:Bio::Das::Lite |
| 15:10 - 15:30 | Cofee Break | ||
| 15:30 - 17:00 | Hands On Tutorial - continued | ||
| 17:15 | Departure from Campus to Cambridge Leisure Park at circa 17:15 hrs. | ||
Day 2
| Time | ProjectName | Speaker | Presentation |
|---|---|---|---|
| 8:45 - 9:30 | Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus. | ||
| 09:30 - 10:00 | Arrival - Tea, Coffee. | ||
| 10:00 | Opening talk | Tim Hubbard | [] |
| 10:20 | Collaborative genomics with DAS- a new interactive DAS client | Thomas Down | [] |
| 10:40 | Progress to report on linking EMBOSS and DAS | Peter Rice | PPT |
| 11:00 | 1.6 Spec Summary | Jonathan Warren | PPT |
| 11:20 | easyDAS: a hosted solution for DAS server creation | Bernat Gel | PPT |
| 11:40 | Update on the DAS Registry | Jonathan Warren | PPT |
| 12:00 | DAS service to provide information on 3D motifs- PDBe | Adel Golovin | [] |
| 12:15-13:30 | Lunch break | ||
| 13:30 | DAS Writeback and its integration in Dasty2 as a proof of concept | Gustavo Salazar | PPT |
| 13:50 | KaryoDAS: An Interactive Genome Visualization Tool Using DECIPHER Data | Manuel Corpas (and Eugene Bragin) | PPT |
| 14:10 | jsDAS: A javascript DAS client library | Jose Villaveces (and Bernat Gel) | PPT |
| 14:30 | Interaction DAS | Hagen Blankenburg | |
| 14:50 | Data integration in ENFIN using standards; the EnCore DAS service | Rafael Jimenez | PDF, PPT |
| 15:10-15:30 | coffee break | ||
| 15:30 | |||
| 15:50 | Update on the collaborative, web-based version of Apollo | Gregg Helt | [] |
| 16:10 | From Pfam Das Alignments to Widgets | Prasad Gunasekaran | |
| 16:30 | Discussion/talk about activity organisation of next day - preliminary groups and chairs of groups | ||
| 16:50 | |||
| 17:10 | Bus Leaves for Cambridge Travel Lodge | ||
| 19:00 | Dinner at Alimentum The Private Dining Room 7.00 pm for 7.30 pm sit down. | ||
Day 3
As per other days -Departure from the Travelodge Cambridge Leisure Park at 08:45 hrs to Campus.
Start at 10am
Departure 16:00 hrs form campus to Travellodge in order for people to get planes and trains etc back home.
Finish at 4pm.
Suggested Topics:
doodle poll for expressing interest in topics
Content negotiation and efficient data formats
how / if the big amounts data can be served via das
DAS for high-density quantitative data.
1: From molecules to sets. 2: Other dimensions: Samples.
Writing a DAS client in C
Running DAS on amazon or google app engine. And seeing what changes have to be made to the dazzle code to enable this. I'd favour app engine.
speeding up annotation retrieval for multiple segment IDs (e.g. retrieving all features for a big alignment)
using jsDas with JalviewLite
The semantic web, RDF and DAS.
DAS authentication and security
Actual topics that we discussed:
Authentication and security - see the proposed spec.[1]
Content Negogation and efficient formats- see proposal spec.1.6E content neg.
RDF.
