Revision as of 16:53, 18 January 2011

DAS workshop March 9th-11th 2009 Genome Campus, Hinxton

BioSapiens Network

Time	Title	Speaker	Resources
8:45 - 9:30	Minibus/Taxis to pick attendees up from hotels and bring to Campus
9:30 - 10:00	Coffee is served outside the training room
10:00 - 10:10	Welcome and Introduction to the Workshop	Jonathan Warren
10:10 - 11:10	DAS - Technical Introduction	Andy Jenkinson	Powerpoint 2008 Powerpoint 1997 PDF
11:10 - 11:30	The DAS Registration Service	Jonathan Warren	The Registry
11:30 - 12:15	Putting it all together	Rob Finn	Powerpoint PDF
12:15 - 13:15	Lunch break
13:15 - 15:10	Hands On Tutorial - Setting up a DAS Server and creating a DAS Client. The room will be split into two groups: one for Java and one for Perl.	Jonathan Warren and Andy Jenkinson	Java server: Dazzle tutorial Java client: Dasobert tutorial Perl server: Bio::Das::ProServer tutorial Perl client: Bio::Das::Lite tutorial
15:10 - 15:30	Coffee break
15:30 - 16:30	Hands On Tutorial - continued

Time	ProjectName	Speaker	Presentation
09:30 - 10:00	Arrival - Tea, Coffee.
10:00	Opening talk	Tim Hubbard	presentation
10:20	Collaborative Annotation tool (MaDAS)	Victor de la Torre	presentation
10:40	Jalview / VAMSAS	Jim Procter / Geoff Barton	presentation
11:00	Pfam	Rob Finn	presentation
11:20	DASgenexp	Bernat Gel	presentation
11:40	Dasty2	Rafael Jimenez	presentation
12:00	EMBOSS as an efficient DAS annotation source	Peter Rice, Mahmut Uludag	presentation
12:15-13:30	Lunch break
13:30	Ensembl	James Smith	presentation
13:50	Integration of info on gene expression and its temporal and spatial localization	Jose Ramon Macias	presentation
14:10	DAS - writeback	Gustavo Salazar	presentation
14:30	Interaction DAS	Hagen Blankenburg	presentation
14:50	DAS for ENCODE data coordination	Felix Kokocinski	pdf
15:10-15:30	coffee break
15:30	A web resource for selecting epitopes for antibodies	Niall Haslam	presentation
15:50	DAS Searches	Andreas Prlic	presentation
16:10	A karyotype DAS client	Rafael Jimenez	presentation
16:30	DASher, a standalone Java client for DAS protein sequence features	David Messina	presentation pdf
16:50	Data Federation - BioMart & DAS	Syed Haider	presentation
17:10	Trellis DAS2 framework- which includes the DAS1-->DAS2 proxy and alpha UCSC DAS2 server	Gregg Helt	presentation
17:30	Discussion/talk about activity organisation of next day - preliminary groups and chairs of groups

@@ Line 39: / Line 39: @@
 | Putting it all together
 | Rob Finn
-| [http://www.biodas.org/workshop_2009/20090309ClientSpecReview.ppt Powerpoint]
+| [http://www.biodas.org/workshop_2009/20090309ClientSpecReview.ppt Powerpoint]<br/>
+ [http://www.biodas.org/workshop_2009/20090309ClientSpecReview.pdf PDF]
 |- style="background:#ffdead;"
 | 12:15 - 13:15