Difference between revisions of "DASworkshop200802"
From BioDAS
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|Opening talk | |Opening talk | ||
|Tim Hubbard | |Tim Hubbard | ||
| − | | | + | |[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/hubbard.pdf presentation] |
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|10:20 | |10:20 | ||
|CNIO | |CNIO | ||
|Osvaldo Grana | |Osvaldo Grana | ||
| − | | | + | |[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/grzibovska.pdf presentation] |
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|10:40 | |10:40 | ||
|Jalview / VAMSAS | |Jalview / VAMSAS | ||
|Jim Procter / Geoff Barton | |Jim Procter / Geoff Barton | ||
| − | | | + | |[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/Jalview_DasDev2008.pdf presentation] |
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|11:00 | |11:00 | ||
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|UniProt / MyDAS | |UniProt / MyDAS | ||
|Phil Jones | |Phil Jones | ||
| − | | | + | |[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/jones.pdf presentation] |
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|11:40 | |11:40 | ||
|Dasty2 | |Dasty2 | ||
|Rafael Jimenez | |Rafael Jimenez | ||
| − | | | + | |[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/jimenez.pdf presentation] |
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|12:00 | |12:00 | ||
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|DAS registry, SPICE | |DAS registry, SPICE | ||
|Andreas Prlic | |Andreas Prlic | ||
| − | | | + | |[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/prlic.pdf presentation] |
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|14:10 | |14:10 | ||
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|Interaction DAS | |Interaction DAS | ||
|Hagen Blankenburg / Mario Albrecht | |Hagen Blankenburg / Mario Albrecht | ||
| − | | | + | |[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/blankenburg.pdf presentation] |
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|14:50 | |14:50 | ||
|PeppeR | |PeppeR | ||
|Jose Ramon Macias | |Jose Ramon Macias | ||
| − | | | + | |[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/macias.pdf presentation] |
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|15:10-15:30 | |15:10-15:30 | ||
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|Annotation Pipeline | |Annotation Pipeline | ||
|Niall Haslam | |Niall Haslam | ||
| − | | | + | |[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/DASworkshopNialHaslam.pdf presentation] |
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|15:50 | |15:50 | ||
|Annotation type ontology | |Annotation type ontology | ||
|Gabby Reeves | |Gabby Reeves | ||
| − | | | + | |[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/reeves.pdf presentation] |
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|16:10 | |16:10 | ||
|Proserver | |Proserver | ||
|Roger Pettett / Andy Jenkinson | |Roger Pettett / Andy Jenkinson | ||
| − | | | + | |[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/jenkinson.pdf presentation] |
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|16:30 | |16:30 | ||
|BioMart & DAS | |BioMart & DAS | ||
|Syed Haider / Arek Kasprzyk | |Syed Haider / Arek Kasprzyk | ||
| − | | | + | |[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/biomart.pdf presentation] |
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|17:00 | |17:00 | ||
Latest revision as of 11:02, 16 January 2009
DAS workshop February 25th, 26th Genome Campus, Hinxton
BioSapiens Network
Day 1
| Time | ProjectName | Speaker | Presentation |
|---|---|---|---|
| 09:30 - 10:00 | Arrival - Tea, Coffee. | ||
| 10:00 | Opening talk | Tim Hubbard | presentation |
| 10:20 | CNIO | Osvaldo Grana | presentation |
| 10:40 | Jalview / VAMSAS | Jim Procter / Geoff Barton | presentation |
| 11:00 | Pfam | Rob Finn | |
| 11:20 | UniProt / MyDAS | Phil Jones | presentation |
| 11:40 | Dasty2 | Rafael Jimenez | presentation |
| 12:00 | short demo: Dastard | Thomas Down | |
| 12:15-13:30 | Lunch break | ||
| 13:30 | Ensembl | James Smith / Eugene Kulesha | |
| 13:50 | DAS registry, SPICE | Andreas Prlic | presentation |
| 14:10 | DAS - writeback | Asja Grzibovska | |
| 14:30 | Interaction DAS | Hagen Blankenburg / Mario Albrecht | presentation |
| 14:50 | PeppeR | Jose Ramon Macias | presentation |
| 15:10-15:30 | coffee break | ||
| 15:30 | Annotation Pipeline | Niall Haslam | presentation |
| 15:50 | Annotation type ontology | Gabby Reeves | presentation |
| 16:10 | Proserver | Roger Pettett / Andy Jenkinson | presentation |
| 16:30 | BioMart & DAS | Syed Haider / Arek Kasprzyk | presentation |
| 17:00 | Open discussion | How to improve interopability, future extensions |
Day 2
| Time | Title | Speaker | Resources |
|---|---|---|---|
| 09:15 - 10:00 | DAS - Technical Introduction | Phil Jones | Presentation: Powerpoint Open Document Format |
| 10:00 - 10:35 | DAS Introductory Tutorial - DAS servers and the DAS Registration Service | Phil Jones | Introductory Tutorial |
| 10:35 - 11:15 | DAS - Client Demonstration: Ensembl, grouping and histograms | Eugene Kulesha | |
| 11:15 - 11:40 | Coffee break | ||
| 11:40 - 12:10 | Dasty2 | Rafael Jimenez | |
| 12:10 - 12:40 | SPICE, Mapping features on 3D, viewing alignments | Andreas Prlic | SPICE links |
| 12:40 - 13:40 | Lunch break | ||
| 13:40 - 14:10 | Pepper | Jose Ramon Macias | http://biocomp.cnb.csic.es/das |
| 14:10 - 15:10 | DAS: Setting Up Your Own Server. In this section the group will split into two tracks - one for Perl programmers and one for Java programmers. | Proserver: Andy Jenkinson Dazzle: Andreas Prlic |
ProServer: writing a SourceAdaptor Dazzle: using existing plugins |
| 15:10 - 15:30 | Coffee break | ||
| 15:30 - 16:30 | DAS - Coding a Client. | Bio::Das::Lite (Perl) - Andy Jenkinson Dasobert (Java) - Andreas Prlic |
Bio::Das::Lite tutorial |
