Difference between revisions of "DASworkshop200802"

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==Day 1==
 
==Day 1==
 
schedule see at
 
schedule see at
−
[http://www.dasregistry.org/course.jsp http://www.dasregistry.org/course.jsp]
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{| class="wikitable" border="1"
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|- style="background:silver"
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! width="100px"|Time
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! ProjectName
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! Speaker
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! Presentation
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|-
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| 09:30 - 10:00
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| Arrival - Tea, Coffee.
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|
 +
|
 +
|-
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|10:00
 +
|Opening talk
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|Tim Hubbard
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|
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|-
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|10:20
 +
|CNIO
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|Osvaldo Grana
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|
 +
|-
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|10:40
 +
|Jalview / VAMSAS
 +
|Jim Procter / Geoff Barton
 +
|
 +
|-
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|11:00
 +
|Pfam
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|Rob Finn
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|
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|-
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|11:20
 +
|UniProt / MyDAS
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|Phil Jones
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|
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|-
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|11:40
 +
|Dasty2
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|Rafael Jimenez
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|
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|-
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|12:00
 +
|short demo: Dastard
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|Thomas Down
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|
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|-
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|12:15-13:30
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|Lunch break
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|
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|
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|-
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|13:30
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|Ensembl
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|James Smith / Eugene Kulesha
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|
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|-
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|13:50
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|DAS registry, SPICE
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|Andreas Prlic
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|
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|-
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14:10
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|DAS - writeback
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|Asja Grzibovska
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|
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|-
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|14:30
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|Interaction DAS
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|Hagen Blankenburg / Mario Albrecht
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|
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|-
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|14:50
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|PeppeR
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|Jose Ramon Macias
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|
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|-
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|15:10-15:30
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|coffee break
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|
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|
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|-
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|15:30
 +
|Annotation Pipeline
 +
|Niall Haslam
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|
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|-
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|15:50
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|Annotation type ontology
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|Gabby Reeves
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|
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|-
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|16:10
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|Proserver
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|Roger Pettett / Andy Jenkinson
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|
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|-
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|16:30
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|BioMart & DAS
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|Syed Haider / Arek Kasprzyk
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|
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|-
 +
|17:00
 +
|Open discussion
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|How to improve interopability, future extensions
 +
|
 +
|-
 +
|}
  
 
==Day 2==
 
==Day 2==

Revision as of 10:36, 16 January 2009

DAS workshop February 25th, 26th Genome Campus, Hinxton

BioSapiens Network

Day 1

schedule see at

14:10
Time ProjectName Speaker Presentation
09:30 - 10:00 Arrival - Tea, Coffee.
10:00 Opening talk Tim Hubbard
10:20 CNIO Osvaldo Grana
10:40 Jalview / VAMSAS Jim Procter / Geoff Barton
11:00 Pfam Rob Finn
11:20 UniProt / MyDAS Phil Jones
11:40 Dasty2 Rafael Jimenez
12:00 short demo: Dastard Thomas Down
12:15-13:30 Lunch break
13:30 Ensembl James Smith / Eugene Kulesha
13:50 DAS registry, SPICE Andreas Prlic
DAS - writeback Asja Grzibovska
14:30 Interaction DAS Hagen Blankenburg / Mario Albrecht
14:50 PeppeR Jose Ramon Macias
15:10-15:30 coffee break
15:30 Annotation Pipeline Niall Haslam
15:50 Annotation type ontology Gabby Reeves
16:10 Proserver Roger Pettett / Andy Jenkinson
16:30 BioMart & DAS Syed Haider / Arek Kasprzyk
17:00 Open discussion How to improve interopability, future extensions

Day 2

Time Title Speaker Resources
09:15 - 10:00 DAS - Technical Introduction Phil Jones Presentation:
Powerpoint
Open Document Format
PDF
10:00 - 10:35 DAS Introductory Tutorial - DAS servers and the DAS Registration Service Phil Jones Introductory Tutorial
10:35 - 11:15 DAS - Client Demonstration: Ensembl, grouping and histograms Eugene Kulesha
11:15 - 11:40 Coffee break
11:40 - 12:10 Dasty2 Rafael Jimenez
12:10 - 12:40 SPICE, Mapping features on 3D, viewing alignments Andreas Prlic SPICE links
12:40 - 13:40 Lunch break
13:40 - 14:10 Pepper Jose Ramon Macias http://biocomp.cnb.csic.es/das
14:10 - 15:10 DAS: Setting Up Your Own Server. In this section the group will split into two tracks - one for Perl programmers and one for Java programmers. Proserver: Andy Jenkinson

Dazzle: Andreas Prlic

ProServer: writing a SourceAdaptor

Dazzle: using existing plugins
Dazzle: writing a plugin
Chromosome 21 GFF File

15:10 - 15:30 Coffee break
15:30 - 16:30 DAS - Coding a Client. Bio::Das::Lite (Perl) - Andy Jenkinson

Dasobert (Java) - Andreas Prlic

Bio::Das::Lite tutorial
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