Difference between revisions of "DASWorkshop2012"
From BioDAS
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| − | ==Day 2 | + | ==Day 2 and Day 3: Developer Hackathon== |
| − | DAS developers | + | This year we will not have a day of talks as in previous years. Instead, both day 2 and day 3 will be "DAS developers' days". This may include some updates on progress since the last workshop, discussions, and a code hackathon. The exact format is yet to be decided. |
| + | |||
===Recent developments since the last workshop=== | ===Recent developments since the last workshop=== | ||
| − | |||
| − | |||
| − | |||
| − | + | * DAS writeback | |
| + | * DAS search | ||
| + | * Registry CRUD via a web service (get, post, put, delete) | ||
| + | * Alternative content negotiation (e.g. the Registry supports JSON for all requests and responses) | ||
| + | * Authentication/encryption in ProServer | ||
| − | + | ===Suggestions for topics on Developers Days=== | |
| − | High density simple features such as | + | Please feel free to add suggestions for discussions or code sprints. |
| + | |||
| + | * JSON roll out to other servers and clients? (JW) | ||
| + | * Firming up of the authentication DAS standard so the registry and writeback are consistent (JW) | ||
| + | * Add support for conditional get (If-Modified-Since - reply only if modified since the modified since header) ? (JW) | ||
| + | * High density simple features such as SNPs - vcf format or simple json format without method and stop? (JW) | ||
===Possible DAS related Talks=== | ===Possible DAS related Talks=== | ||
| − | DAS Registry - new architecture and capabilities ( | + | |
| + | * DAS Registry - new architecture and capabilities (JW) | ||
| + | * DAS in personal genomics (MC/JW/BG) | ||
==Day 3 DAS Developers Day Hackathon== | ==Day 3 DAS Developers Day Hackathon== | ||
DAS Developers Hackathon | DAS Developers Hackathon | ||
Location is the EBI Training Room | Location is the EBI Training Room | ||
Revision as of 09:17, 14 February 2012
The 2012 DAS Workshop will be held on 27-29 Feb at the EBI Hinxton campus.
- Information & registration: registration
Contents
DAS Workshop 2012 Schedule
All 3 days will be held in the EBI training room.
Day 1
Some knowledge/experience of PERL or Java and or Javascript would be beneficial for the hands on training day.
Example DAS commands can be found here as a DAS quick reference guide: DAS examples
The draft schedule for Day 1 is below. Please note that session times are a rough indication only and will vary according to progress on the day.
| Time | Title | Speaker | Resources |
|---|---|---|---|
| 9:00 | Welcome and Information | JW | |
| 9:00 | DAS - Introduction/Overview | AJ | Introduction Technical Introduction |
| 9:40 | The DAS Game | LG | The DAS Game |
| 10:00 | DAS - Technical Introduction | AJ | Technical Introduction |
| 10:20 | Coffee break | ||
| 10:40 | Using DAS software, an introduction to some DAS implementations | RJ | |
| 11:00 | Hands-on: creating a DAS source from a file with EasyDAS | RJ | |
| 11:10 | Hands-on: viewing DAS sources with Ensembl OR Dasty | AJ/RJ | |
| 11:20 | Introduction to DAS server frameworks | JW | 10 minute introduction to DAS servers |
| 11:30 | Hands-on programming tutorial: Creating a custom DAS source | AJ/JW/LG/RJ | MyDAS -or- ProServer |
| 12:30 | Lunch break | ||
| 13:30 | Tutorial - DAS servers continued | AJ/JW/LG/RJ | |
| 14:50 | Introduction and hands-on: The DAS registry | JW | DAS Registry Tutorial |
| 15:10 | Coffee Break | ||
| 15:30 | Introduction to DAS client libraries | LG | |
| 15:40 | Hands-on programming tutorial: DAS client libraries | AJ/JW/LG/RJ | Bio::Das::Lite-or- JDAS -or- JSDAS. Each will cover sources, sequence & features using the same examples |
| 17:30 | Departure from Campus to Whittlesford Station/Holiday Inn at circa 17:30 hrs. | ||
| 19:00 | Dinner at the Red Lion Whittlesford 7.00 pm for 7.30 pm sit down. | ||
Day 2 and Day 3: Developer Hackathon
This year we will not have a day of talks as in previous years. Instead, both day 2 and day 3 will be "DAS developers' days". This may include some updates on progress since the last workshop, discussions, and a code hackathon. The exact format is yet to be decided.
Recent developments since the last workshop
- DAS writeback
- DAS search
- Registry CRUD via a web service (get, post, put, delete)
- Alternative content negotiation (e.g. the Registry supports JSON for all requests and responses)
- Authentication/encryption in ProServer
Suggestions for topics on Developers Days
Please feel free to add suggestions for discussions or code sprints.
- JSON roll out to other servers and clients? (JW)
- Firming up of the authentication DAS standard so the registry and writeback are consistent (JW)
- Add support for conditional get (If-Modified-Since - reply only if modified since the modified since header) ? (JW)
- High density simple features such as SNPs - vcf format or simple json format without method and stop? (JW)
- DAS Registry - new architecture and capabilities (JW)
- DAS in personal genomics (MC/JW/BG)
Day 3 DAS Developers Day Hackathon
DAS Developers Hackathon Location is the EBI Training Room
