Difference between revisions of "DASWorkshop2012"

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! Speaker
 
! Speaker
 
! Resources
 
! Resources
 +
|-
 +
| 9:00
 +
| Welcome and Information
 +
| JW
 +
|
 
|-  
 
|-  
 
| 9:00
 
| 9:00
 
| DAS - Introduction/Overview
 
| DAS - Introduction/Overview
−
|  
+
| AJ
 
| [http://www.biotnet.org/training-materials/introduction-das Introduction] [http://www.biotnet.org/training-materials/technical-introduction-das Technical Introduction]
 
| [http://www.biotnet.org/training-materials/introduction-das Introduction] [http://www.biotnet.org/training-materials/technical-introduction-das Technical Introduction]
 
|-
 
|-
−
|  
+
| 9:40
 
| The DAS Game
 
| The DAS Game
−
|
+
| LG
 
| [http://www.biotnet.org/training-materials/das-game The DAS Game]
 
| [http://www.biotnet.org/training-materials/das-game The DAS Game]
 
|-
 
|-
 +
| 10:00
 +
| DAS - Technical Introduction
 +
| AJ
 +
| [http://www.biotnet.org/training-materials/technical-introduction-das Technical Introduction]
 +
|- style="background:#ffdead;"
 +
| 10:20
 +
| colspan="3" | Coffee break
 +
|-
 +
| 10:40
 +
| Using DAS software, an introduction to some DAS implementations
 +
| RJ
 
|  
 
|  
−
| Hands-on tutorial: using DAS software, 10 minute introduction of some DAS implementations
+
|-
 +
| 11:00
 +
| Hands-on: creating a DAS source from a file with EasyDAS
 +
| RJ
 
|  
 
|  
 +
|-
 +
| 11:10
 +
| Hands-on: viewing DAS sources with Ensembl OR Dasty
 +
| AJ/RJ
 
|  
 
|  
 
|-
 
|-
−
|  
+
| 11:20
 +
| Introduction to DAS server frameworks
 +
| JW
 +
| [http://www.biotnet.org/training-materials/das-servers 10 minute introduction to DAS servers]
 +
|-
 +
| 11:30
 
| Hands-on programming tutorial: Creating a custom DAS source
 
| Hands-on programming tutorial: Creating a custom DAS source
−
|  
+
| AJ/JW/LG/RJ
−
| [http://www.biotnet.org/training-materials/das-servers 10 minute introduction to DAS servers], [http://code.google.com/p/mydas/wiki/Tutorials MyDAS] -or- [http://www.biotnet.org/training-materials/bio-das-proserver-tutorial ProServer]
+
| [http://code.google.com/p/mydas/wiki/Tutorials MyDAS] -or- [http://www.biotnet.org/training-materials/bio-das-proserver-tutorial ProServer]
 
|- style="background:#ffdead;"
 
|- style="background:#ffdead;"
−
| 12:15 - 13:15
+
| 12:30
 
| colspan="3" | Lunch break
 
| colspan="3" | Lunch break
 
|-
 
|-
−
|  
+
| 13:30
 
| Tutorial - DAS servers continued
 
| Tutorial - DAS servers continued
−
|  
+
| AJ/JW/LG/RJ
−
| Perl(ProServer) and Java(MyDAS)
+
|
 
|-
 
|-
−
|
+
| 14:50
−
| Hands on Tutorial The DAS registry: Short introduction talk then hands on tutorial
+
| Introduction and hands-on: The DAS registry
−
|
+
| JW
 
| [http://www.biotnet.org/training-materials/short-das-registry-tutorial-basic-knowledge DAS Registry Tutorial]  
 
| [http://www.biotnet.org/training-materials/short-das-registry-tutorial-basic-knowledge DAS Registry Tutorial]  
 
|-style="background:#ffdead;"
 
|-style="background:#ffdead;"
−
| 15:10 - 15:30
+
| 15:10
−
| colspan="3" | Cofee Break
+
| colspan="3" | Coffee Break
 
|-
 
|-
−
|  
+
| 15:30
−
| Hands-on programming tutorial: DAS client libraries, 10 minute introduction
+
| Introduction to DAS client libraries
−
|  
+
| LG
 +
|
 +
|-
 +
| 15:40
 +
| Hands-on programming tutorial: DAS client libraries
 +
| AJ/JW/LG/RJ
 
| [http://www.biotnet.org/training-materials/bio-das-lite-tutorial Bio::Das::Lite]-or- [http://www.biotnet.org/training-materials/jdas JDAS] -or- [http://code.google.com/p/jsdas/wiki/tutorial JSDAS]. Each will cover sources, sequence & features using the same examples
 
| [http://www.biotnet.org/training-materials/bio-das-lite-tutorial Bio::Das::Lite]-or- [http://www.biotnet.org/training-materials/jdas JDAS] -or- [http://code.google.com/p/jsdas/wiki/tutorial JSDAS]. Each will cover sources, sequence & features using the same examples
 
|-   
 
|-   
 
|17:30
 
|17:30
−
| colspan="3" |Departure from Campus to Whittlesford Station/Holiday Inn at circa 17:30 hrs.
+
| colspan="3" | Departure from Campus to Whittlesford Station/Holiday Inn at circa 17:30 hrs.
 
|- style="background:#ffdead;"
 
|- style="background:#ffdead;"
 
|19:00
 
|19:00
−
|Dinner at the Red Lion Whittlesford 7.00 pm for 7.30 pm sit down.
+
| colspan="3" | Dinner at the Red Lion Whittlesford 7.00 pm for 7.30 pm sit down.
−
|
+
 
−
|
 
 
|-
 
|-
 
|}
 
|}

Revision as of 09:07, 14 February 2012

The 2012 DAS Workshop will be held on 27-29 Feb at the EBI Hinxton campus.


DAS Workshop 2012 Schedule

All 3 days will be held in the EBI training room.

Day 1

Some knowledge/experience of PERL or Java and or Javascript would be beneficial for the hands on training day.

Example DAS commands can be found here as a DAS quick reference guide: DAS examples

Time Title Speaker Resources
9:00 Welcome and Information JW
9:00 DAS - Introduction/Overview AJ Introduction Technical Introduction
9:40 The DAS Game LG The DAS Game
10:00 DAS - Technical Introduction AJ Technical Introduction
10:20 Coffee break
10:40 Using DAS software, an introduction to some DAS implementations RJ
11:00 Hands-on: creating a DAS source from a file with EasyDAS RJ
11:10 Hands-on: viewing DAS sources with Ensembl OR Dasty AJ/RJ
11:20 Introduction to DAS server frameworks JW 10 minute introduction to DAS servers
11:30 Hands-on programming tutorial: Creating a custom DAS source AJ/JW/LG/RJ MyDAS -or- ProServer
12:30 Lunch break
13:30 Tutorial - DAS servers continued AJ/JW/LG/RJ
14:50 Introduction and hands-on: The DAS registry JW DAS Registry Tutorial
15:10 Coffee Break
15:30 Introduction to DAS client libraries LG
15:40 Hands-on programming tutorial: DAS client libraries AJ/JW/LG/RJ Bio::Das::Lite-or- JDAS -or- JSDAS. Each will cover sources, sequence & features using the same examples
17:30 Departure from Campus to Whittlesford Station/Holiday Inn at circa 17:30 hrs.
19:00 Dinner at the Red Lion Whittlesford 7.00 pm for 7.30 pm sit down.

Day 2 Developers Hackathon

DAS developers day

Recent developments since the last workshop

DAS writeback, DAS search, Registry CRUD via web service (get, post, put, delete), Registry supports JSON for all requests and responses,

Suggestions for discussions on Developers Days

JSON roll out to other servers and clients? (jw)

Firming up of the authentication DAS standard so the registry and writeback are consistent (jw)

Add support for conditional get (If-Modified-Since - reply only if modified since the modified since header) ? (jw)

High density simple features such as snps - vcf format or simple json format wtihout method and stop? (jw)

Possible DAS related Talks

DAS Registry - new architecture and capabilities (jw)

Day 3 DAS Developers Day Hackathon

DAS Developers Hackathon Location is the EBI Training Room

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