Difference between revisions of "DASworkshop200802"

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|Opening talk  
 
|Opening talk  
 
|Tim Hubbard
 
|Tim Hubbard
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|[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/hubbard.pdf presentation]
 
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|10:20
 
|10:20
 
|CNIO
 
|CNIO
 
|Osvaldo Grana
 
|Osvaldo Grana
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|[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/grzibovska.pdf presentation]
 
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|10:40
 
|10:40
 
|Jalview / VAMSAS
 
|Jalview / VAMSAS
 
|Jim Procter / Geoff Barton
 
|Jim Procter / Geoff Barton
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|[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/Jalview_DasDev2008.pdf presentation]
 
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|11:00
 
|11:00
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|UniProt / MyDAS
 
|UniProt / MyDAS
 
|Phil Jones
 
|Phil Jones
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|[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/jones.pdf presentation]
 
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|11:40
 
|11:40
 
|Dasty2
 
|Dasty2
 
|Rafael Jimenez
 
|Rafael Jimenez
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|[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/jimenez.pdf presentation]
 
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|12:00
 
|12:00
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|DAS registry, SPICE
 
|DAS registry, SPICE
 
|Andreas Prlic
 
|Andreas Prlic
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|[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/prlic.pdf presentation]
 
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14:10
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|14:10
 
|DAS - writeback
 
|DAS - writeback
 
|Asja Grzibovska
 
|Asja Grzibovska
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|Interaction DAS
 
|Interaction DAS
 
|Hagen Blankenburg / Mario Albrecht
 
|Hagen Blankenburg / Mario Albrecht
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|[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/blankenburg.pdf presentation]
 
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|14:50
 
|14:50
 
|PeppeR
 
|PeppeR
 
|Jose Ramon Macias
 
|Jose Ramon Macias
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|[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/macias.pdf presentation]
 
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|15:10-15:30
 
|15:10-15:30
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|Annotation Pipeline
 
|Annotation Pipeline
 
|Niall Haslam
 
|Niall Haslam
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|[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/DASworkshopNialHaslam.pdf  presentation]
 
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|15:50
 
|15:50
 
|Annotation type ontology
 
|Annotation type ontology
 
|Gabby Reeves
 
|Gabby Reeves
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|[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/reeves.pdf presentation]
 
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|16:10
 
|16:10
 
|Proserver
 
|Proserver
 
|Roger Pettett / Andy Jenkinson
 
|Roger Pettett / Andy Jenkinson
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|[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/jenkinson.pdf presentation]
 
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|16:30
 
|16:30
 
|BioMart & DAS
 
|BioMart & DAS
 
|Syed Haider / Arek Kasprzyk
 
|Syed Haider / Arek Kasprzyk
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|[http://www.sanger.ac.uk/Users/ap3/dasworkshop200802/biomart.pdf presentation]
 
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|17:00
 
|17:00

Latest revision as of 07:02, 16 January 2009

DAS workshop February 25th, 26th Genome Campus, Hinxton

BioSapiens Network

Day 1

Time ProjectName Speaker Presentation
09:30 - 10:00 Arrival - Tea, Coffee.
10:00 Opening talk Tim Hubbard presentation
10:20 CNIO Osvaldo Grana presentation
10:40 Jalview / VAMSAS Jim Procter / Geoff Barton presentation
11:00 Pfam Rob Finn
11:20 UniProt / MyDAS Phil Jones presentation
11:40 Dasty2 Rafael Jimenez presentation
12:00 short demo: Dastard Thomas Down
12:15-13:30 Lunch break
13:30 Ensembl James Smith / Eugene Kulesha
13:50 DAS registry, SPICE Andreas Prlic presentation
14:10 DAS - writeback Asja Grzibovska
14:30 Interaction DAS Hagen Blankenburg / Mario Albrecht presentation
14:50 PeppeR Jose Ramon Macias presentation
15:10-15:30 coffee break
15:30 Annotation Pipeline Niall Haslam presentation
15:50 Annotation type ontology Gabby Reeves presentation
16:10 Proserver Roger Pettett / Andy Jenkinson presentation
16:30 BioMart & DAS Syed Haider / Arek Kasprzyk presentation
17:00 Open discussion How to improve interopability, future extensions

Day 2

Time Title Speaker Resources
09:15 - 10:00 DAS - Technical Introduction Phil Jones Presentation:
Powerpoint
Open Document Format
PDF
10:00 - 10:35 DAS Introductory Tutorial - DAS servers and the DAS Registration Service Phil Jones Introductory Tutorial
10:35 - 11:15 DAS - Client Demonstration: Ensembl, grouping and histograms Eugene Kulesha
11:15 - 11:40 Coffee break
11:40 - 12:10 Dasty2 Rafael Jimenez
12:10 - 12:40 SPICE, Mapping features on 3D, viewing alignments Andreas Prlic SPICE links
12:40 - 13:40 Lunch break
13:40 - 14:10 Pepper Jose Ramon Macias http://biocomp.cnb.csic.es/das
14:10 - 15:10 DAS: Setting Up Your Own Server. In this section the group will split into two tracks - one for Perl programmers and one for Java programmers. Proserver: Andy Jenkinson

Dazzle: Andreas Prlic

ProServer: writing a SourceAdaptor

Dazzle: using existing plugins
Dazzle: writing a plugin
Chromosome 21 GFF File

15:10 - 15:30 Coffee break
15:30 - 16:30 DAS - Coding a Client. Bio::Das::Lite (Perl) - Andy Jenkinson

Dasobert (Java) - Andreas Prlic

Bio::Das::Lite tutorial