Difference between revisions of "DASWorkshop2010"

From BioDAS
Jump to: navigation, search
(→‎Suggested Topics:)
(→‎DAS Workshop 2010 Schedule)
Line 4: Line 4:
  
 
=DAS Workshop 2010 Schedule=
 
=DAS Workshop 2010 Schedule=
 +
==Day 1==
 +
 +
 +
{| class="wikitable" border="1"
 +
|- style="background:silver"
 +
! width="100px"|Time
 +
! Title
 +
! Speaker
 +
! Resources
 +
|-
 +
| 8:45 - 9:30
 +
| colspan="3" | Minibus/Taxis to pick attendees up from hotels and bring to Campus
 +
|- style="background:#ffdead;"
 +
| 9:30 - 10:00
 +
| colspan="3" | Coffee is served outside the training room
 +
|- style="background:#ffdead;"
 +
|-
 +
| 10:00 - 10:10
 +
| Welcome and Introduction to the Workshop
 +
| Jonathan Warren
 +
|
 +
|-
 +
| 10:10 - 11:10
 +
| DAS - Technical Introduction
 +
| Andy Jenkinson
 +
| [http://www.ebi.ac.uk/~aj/das_workshop_2009/DAS-Technical-Introduction.pptx Powerpoint 2008]<br/>
 +
[http://www.ebi.ac.uk/~aj/das_workshop_2009/DAS-Technical-Introduction.ppt Powerpoint 1997]<br/>
 +
[http://www.ebi.ac.uk/~aj/das_workshop_2009/DAS-technical-Introduction.pdf PDF]
 +
|-
 +
| 11:10 - 11:30
 +
| The DAS Registration Service
 +
| Jonathan Warren
 +
| [http://www.biodas.org/wiki/DASworkshop200802:intro_tutorial#Finding_DAS_sources_.E2.80.93_the_DAS_Registry_Service_at_the_Sanger_Institute The Registry]
 +
|-
 +
| 11:30 - 12:15
 +
| Putting it all together
 +
| Rob Finn
 +
| [http://www.sanger.ac.uk/Software/analysis/das/presentations/Finn_DAS_20090309.pdf presentation]
 +
|- style="background:#ffdead;"
 +
| 12:15 - 13:15
 +
| colspan="3" | Lunch break
 +
|-
 +
| 13:15 - 15:10
 +
| Hands On Tutorial - Setting up a DAS Server and creating a DAS Client. The room will be split into two groups: one for Java and one for Perl.
 +
| Jonathan Warren and Andy Jenkinson
 +
| Java server: [http://www.dasregistry.org/DazzleTutorial.jsp Dazzle tutorial]<br/>
 +
Java client: [http://www.dasregistry.org/DasobertTutorial.jsp Dasobert tutorial]<br/>
 +
Perl server: [http://www.ebi.ac.uk/~aj/das_workshop_2009/proserver_tutorial.html Bio::Das::ProServer tutorial]<br/>
 +
Perl client: [http://www.ebi.ac.uk/~aj/das_workshop_2009/daslite_tutorial.html Bio::Das::Lite tutorial]<br/>
 +
|- style="background:#ffdead;"
 +
| 15:10 - 15:30
 +
| colspan="3"|Coffee break
 +
|-
 +
| 15:30 - 16:30
 +
| colspan="3" | Hands On Tutorial - continued
 +
|}
  
 
==Day 2==
 
==Day 2==

Revision as of 11:45, 25 March 2010

The 2010 DAS Workshop will be held on 7-9 April at the EBI Hinxton campus.


DAS Workshop 2010 Schedule

Day 1

Time Title Speaker Resources
8:45 - 9:30 Minibus/Taxis to pick attendees up from hotels and bring to Campus
9:30 - 10:00 Coffee is served outside the training room
10:00 - 10:10 Welcome and Introduction to the Workshop Jonathan Warren
10:10 - 11:10 DAS - Technical Introduction Andy Jenkinson Powerpoint 2008

Powerpoint 1997
PDF

11:10 - 11:30 The DAS Registration Service Jonathan Warren The Registry
11:30 - 12:15 Putting it all together Rob Finn presentation
12:15 - 13:15 Lunch break
13:15 - 15:10 Hands On Tutorial - Setting up a DAS Server and creating a DAS Client. The room will be split into two groups: one for Java and one for Perl. Jonathan Warren and Andy Jenkinson Java server: Dazzle tutorial

Java client: Dasobert tutorial
Perl server: Bio::Das::ProServer tutorial
Perl client: Bio::Das::Lite tutorial

15:10 - 15:30 Coffee break
15:30 - 16:30 Hands On Tutorial - continued

Day 2

Time ProjectName Speaker Presentation
09:30 - 10:00 Arrival - Tea, Coffee.
10:00 Opening talk Tim Hubbard []
10:20 Collaborative genomics with DAS- a new interactive DAS client Thomas Down []
10:40 Progress to report on linking EMBOSS and DAS Peter Rice []
11:00 Visualization of sequence features with STRAP Christoph Gille []
11:20 easyDAS: a hosted solution for DAS server creation Bernat Gel []
11:40 Update on the DAS Registry Jonathan Warren []
12:00 DAS service to provide information on 3D motifs- PDBe Adel Golovin []
12:15-13:30 Lunch break
13:30 DAS Writeback and its integration in Dasty2 as a proof of concept Gustavo Salazar []
13:50 KaryoDAS: An Interactive Genome Visualization Tool Using DECIPHER Data Eugene Bragin/Manuel Corpas []
14:10 jsDAS: A javascript DAS client library Jose Villaveces/ Bernat Gel []
14:30 Interaction DAS Hagen Blankenburg []
14:50 Data integration in ENFIN using standards; the EnCore DAS service Rafael Jimenez []
15:10-15:30 coffee break
15:30 Text Mining DAS source Maximilian Haussler []
15:50 Update on the collaborative, web-based version of Apollo Gregg Helt []
16:10 From Pfam Das Alignments to Widgets Prasad Gunasekaran []
16:30 Discussion/talk about activity organisation of next day - preliminary groups and chairs of groups []
16:50
17:10 Bus Leaves for Cambridge Travel Lodge []
19:00 Dinner at Alimentum The Private Dining Room 7.00 pm for 7.30 pm sit down.

Day 3

Suggested Topics:

Content negotiation and efficient data formats

how / if the big amounts data can be served via das

DAS for high-density quantitative data.

1: From molecules to sets. 2: Other dimensions: Samples.

Writing a DAS client in C

Running DAS on amazon or google app engine. And seeing what changes have to be made to the dazzle code to enable this. I'd favour app engine.

speeding up annotation retrieval for multiple segment IDs (e.g. retrieving all features for a big alignment)

using jsDas with JalviewLite

The semantic web, RDF and DAS.

DAS authentication and security
Retrieved from "http://biodas.open-bio.org/w/index.php?title=DASWorkshop2010&oldid=1020"