Difference between revisions of "DAS1.6"
From BioDAS
(→(DAS) 1.6 Development and Tutorials) |
(→Dazzle Example adaptor for 1.6 spec source compliant with the registry) |
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Subversion develpment repository http://www.derkholm.net/svn/repos/dazzle/branches/16Dazzle | Subversion develpment repository http://www.derkholm.net/svn/repos/dazzle/branches/16Dazzle | ||
See class org.biojava.servlets.dazzle.datasource.SimpleFile16ExampleSource for a datasource that conforms to the new 1.6 Spec. | See class org.biojava.servlets.dazzle.datasource.SimpleFile16ExampleSource for a datasource that conforms to the new 1.6 Spec. | ||
+ | <pre> | ||
+ | <datasource id="test16genes" jclass="org.biojava.servlets.dazzle.datasource"> | ||
+ | <string name="name" value="16 File Test" /> | ||
+ | <string name="description" value="Data source for testing 1.6 heirachy structure" /> | ||
+ | <string name="version" value="1.0" /> | ||
+ | |||
+ | <string name="fileName" value="test16genes.txt" /> | ||
+ | |||
+ | <string name="stylesheet" value="test16.style" /> | ||
+ | </datasource> | ||
+ | </pre> |
Revision as of 12:34, 29 January 2010
Note: this is NOT the official version of the DAS specification.
Distributed Annotation System (DAS) 1.6
This is a working document and a proposal for a reworked DAS specification which hopes to:
- clarify the existing DAS spec
- better reflect how DAS is being used in the community today
- better reflect the use of DAS beyond the genome-centric arena (protein sequences and structures)
- ratify commands from the 1.53E spec
- introduce some ideas inspired by DAS/2
- formally introduce the DAS registry
- migrate from the use of DTDs for describing the XML formats to RelaxNG
Note: the DAS specification is a technical document but with some effort should hopefully be readable and understandable by people without a deep understanding of broader technical issues and other system architectures. That is, it makes only basic assumptions.
The specification has been written as a number of drafts:
Last modified: 29th Jan 2010
(DAS) 1.6 Development and Tutorials
Dazzle Example adaptor for 1.6 spec source compliant with the registry
Subversion develpment repository http://www.derkholm.net/svn/repos/dazzle/branches/16Dazzle See class org.biojava.servlets.dazzle.datasource.SimpleFile16ExampleSource for a datasource that conforms to the new 1.6 Spec.
<datasource id="test16genes" jclass="org.biojava.servlets.dazzle.datasource"> <string name="name" value="16 File Test" /> <string name="description" value="Data source for testing 1.6 heirachy structure" /> <string name="version" value="1.0" /> <string name="fileName" value="test16genes.txt" /> <string name="stylesheet" value="test16.style" /> </datasource>