The primary way to retrieve information from a DAS/2 server is to perform a GET request on a DAS/2 URL.
REQUEST:
GET http://das.biopackages.net/das/assay/human/17/experiment
RESPONSE:
Content-Type: text/x-das-experiments+xml <Experiment_assnlist> <Experiment identifier="787" name="491 - HCC Hep"> <Providers_assnreflist> <Contact_ref identifier="../contact/150"/> </Providers_assnreflist> <BioAssays_assnreflist> <BioAssay_ref identifier="../assay/4839"/> <BioAssay_ref identifier="../assay/4840"/> </BioAssays_assnreflist> </Experiment> <Experiment identifier="788" name="473 - Glycerolkinase chips 4"> <Providers_assnreflist> <Contact_ref identifier="../contact/200"/> </Providers_assnreflist> <BioAssays_assnreflist> <BioAssay_ref identifier="../assay/4841"/> <BioAssay_ref identifier="../assay/4842"/> <BioAssay_ref identifier="../assay/4843"/> <BioAssay_ref identifier="../assay/4844"/> </BioAssays_assnreflist> </Experiment> </Experiment_assnlist>
REQUEST:
GET http://das.biopackages.net/das/assay/human/17/factor
RESPONSE:
Content-Type: text/x-das-factors+xml
REQUEST:
GET http://das.biopackages.net/das/assay/human/17/contact
RESPONSE:
Content-Type: text/x-das-contacts+xml <Contact_assnlist> <Organization identifier="1" name="Affymetrix"> </Organization> <Organization identifier="2" name="Helt, Gregg"> <Parent_assnref> <Organization_ref identifier="1"/> </Parent_assnref> </Organization> </Contact_assnlist>
REQUEST:
GET http://das.biopackages.net/das/assay/human/17/material
RESPONSE:
Content-Type: text/x-das-materials+xml <BioMaterial_assnlist> <BioSource identifier="source_4610" name="1388 - Ctrl Pt 1 - Timestep 2( )"> <Characteristics_assnlist> <OntologyEntry category="MGED:Anatomy"> <OntologyReference_assn> <DatabaseEntry URI="../type/MA:body"> </DatabaseEntry> </OntologyReference_assn> </OntologyEntry> </Characteristics_assnlist> <SourceContact_assnreflist> <Organization_ref identifier="../contact/150"/> </SourceContact_assnreflist> </BioSource> <LabeledExtract identifier="4610"> <Treatments_assnlist> <Treatment identifier="treatment_4610"> <SourceBioMaterialMeasurements_assnlist> <BioMaterialMeasurement> <BioMaterial_assnref> <BioSource_ref identifier="source_4610"/> </BioMaterial_assnref> </BioMaterialMeasurement> </SourceBioMaterialMeasurements_assnlist> </Treatment> </Treatments_assnlist> </LabeledExtract> <BioSource identifier="source_4611" name="1389 - Exp Pt 1 - Timestep 2( )"> <Characteristics_assnlist> <OntologyEntry category="MGED:Anatomy"> <OntologyReference_assn> <DatabaseEntry URI="../type/MA:body"> </DatabaseEntry> </OntologyReference_assn> </OntologyEntry> </Characteristics_assnlist> <SourceContact_assnreflist> <Organization_ref identifier="../contact/150"/> </SourceContact_assnreflist> </BioSource> <LabeledExtract identifier="4611"> <Treatments_assnlist> <Treatment identifier="treatment_4611"> <SourceBioMaterialMeasurements_assnlist> <BioMaterialMeasurement> <BioMaterial_assnref> <BioSource_ref identifier="source_4611"/> </BioMaterial_assnref> </BioMaterialMeasurement> </SourceBioMaterialMeasurements_assnlist> </Treatment> </Treatments_assnlist> </LabeledExtract> </BioMaterial_assnlist>
there is some instability related to whether the material annotations are under /property or /type. this section of the spec is unstable.
REQUEST:
GET http://das.biopackages.net/das/assay/human/17/property
RESPONSE:
Content-Type: text/x-das-properties+xml
there is some instability related to whether the material annotations are under /property or /type. this section of the spec is unstable.
REQUEST:
GET http://das.biopackages.net/das/assay/human/17/type
RESPONSE:
Content-Type: text/x-das-types+xml
i haven't added feature treatments to any records on the prototype server, so this aspect of the spec is not yet written
REQUEST:
GET http://das.biopackages.net/das/assay/human/17/treatment
RESPONSE:
Content-Type: text/x-das-treatments+xml
REQUEST:
GET http://das.biopackages.net/das/assay/human/17/protocol
RESPONSE:
Content-Type: text/x-das-protocols+xml <Protocol_assnlist> <Protocol identifier="dabg" title="dabg"> </Protocol> <Protocol identifier="dchip" title="dchip"> </Protocol> </Protocol_assnlist>
REQUEST:
GET http://das.biopackages.net/das/assay/human/17/assay
RESPONSE:
Content-Type: text/x-das-materials+xml <BioAssay_assnlist> <PhysicalBioAssay identifier="4851"> <PhysicalBioAssayData_assnlist> <Image URI="../image/4851"> </Image> </PhysicalBioAssayData_assnlist> <BioAssayCreation_assn> <Hybridization> <SourceBioMaterialMeasurements_assnlist> <BioMaterialMeasurement> <BioMaterial_assnref> <BioMaterial_ref identifier="../material/4618"/> </BioMaterial_assnref> <Measurement_assn> <Measurement> </Measurement> </Measurement_assn> </BioMaterialMeasurement> </SourceBioMaterialMeasurements_assnlist> <Array_assnref> <Array_ref identifier="../platform/Affymetrix_MG-U74Av2"/> </Array_assnref> </Hybridization> </BioAssayCreation_assn> </PhysicalBioAssay> <PhysicalBioAssay identifier="4852"> <PhysicalBioAssayData_assnlist> <Image URI="../image/4852"> </Image> </PhysicalBioAssayData_assnlist> <BioAssayCreation_assn> <Hybridization> <SourceBioMaterialMeasurements_assnlist> <BioMaterialMeasurement> <BioMaterial_assnref> <BioMaterial_ref identifier="../material/4619"/> </BioMaterial_assnref> <Measurement_assn> <Measurement> </Measurement> </Measurement_assn> </BioMaterialMeasurement> </SourceBioMaterialMeasurements_assnlist> <Array_assnref> <Array_ref identifier="../platform/Affymetrix_MG-U74Av2"/> </Array_assnref> </Hybridization> </BioAssayCreation_assn> </PhysicalBioAssay> </BioAssay_assnlist>
REQUEST:
GET http://das.biopackages.net/das/assay/human/17/image
RESPONSE:
Content-Type: text/x-das-assays+xml
REQUEST:
GET http://das.biopackages.net/das/assay/human/17/image
RESPONSE:
Content-Type: text/x-das-images+xml <RESULTS> <RESULT id="3862" assay="../assay/4033" image="../image/4033" protocol="../protocol/4"/> <RESULT id="3863" assay="../assay/3990" image="../image/3990" protocol="../protocol/4"/> <RESULT id="3864" assay="../assay/3991" image="../image/3991" protocol="../protocol/4"/> <RESULT id="3865" assay="../assay/3992" image="../image/3992" protocol="../protocol/4"/> </RESULTS>
REQUEST:
GET http://das.biopackages.net/das/assay/human/17/platform
RESPONSE:
Content-Type: text/x-das-platforms+xml <ArrayDesign_assnlist> <ArrayDesign identifier="Affymetrix_ATH1-121501"> <DesignProviders_assnreflist> <Contact_ref identifier="../contact/1"/> </DesignProviders_assnreflist> </ArrayDesign> <ArrayDesign identifier="Affymetrix_Mouse430A_2"> <DesignProviders_assnreflist> <Contact_ref identifier="../contact/1"/> </DesignProviders_assnreflist> </ArrayDesign> <ArrayDesign identifier="Affymetrix_Mouse430_2"> <DesignProviders_assnreflist> <Contact_ref identifier="../contact/1"/> </DesignProviders_assnreflist> </ArrayDesign> <ArrayDesign identifier="Affymetrix_MOE430B"> <DesignProviders_assnreflist> <Contact_ref identifier="../contact/1"/> </DesignProviders_assnreflist> </ArrayDesign> </ArrayDesign_assnlist>